Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ALDH3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36250 636 / 0 ALDH3F1 aldehyde dehydrogenase 3F1 (.1) AT1G44170 484 / 1e-168 ALDH4, ALDH3H1 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) AT4G34240 444 / 4e-152 ALDH3I1 aldehyde dehydrogenase 3I1 (.1.2) AT3G66658 187 / 7e-53 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT1G74920 149 / 2e-39 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT3G48170 144 / 1e-37 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G79440 142 / 8e-37 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT1G23800 121 / 1e-29 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G48000 121 / 2e-29 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT3G24503 103 / 1e-23 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G259100 [exp] 598 / 0 AT4G36250 556 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.005G179300 [exp] 479 / 1e-166 AT1G44170 736 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.002G081800 [exp] 479 / 1e-166 AT1G44170 731 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.001G412900 [exp] 467 / 7e-161 AT4G34240 678 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.005G069800 [exp] 459 / 7e-158 AT4G34240 626 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.008G106000 [exp] 186 / 2e-52 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.015G070600 [exp] 149 / 3e-39 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.012G075600 [exp] 145 / 6e-38 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.010G174000 [exp] 142 / 1e-36 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041806 [exp] 671 / 0 AT4G36250 640 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10028357 [exp] 670 / 0 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10002557 [exp] 580 / 0 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10031280 [exp] 555 / 0 AT4G36250 555 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10031849 [exp] 550 / 0 AT4G36250 550 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10029684 [exp] 473 / 4e-164 AT1G44170 742 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10025681 [exp] 460 / 4e-159 AT1G44170 743 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10015688 [exp] 460 / 2e-158 AT4G34240 674 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Lus10018153 [exp] 455 / 6e-157 AT1G44170 734 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10037694 [exp] 448 / 5e-146 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [poplar] [flax] ALDH-like PF00171 [poplar] [flax] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Potri.007G017100.1 pacid=42764821 polypeptide=Potri.007G017100.1.p locus=Potri.007G017100 ID=Potri.007G017100.1.v4.1 annot-version=v4.1 ATGGAGGGTCTAGAGGGAACTCTGGCCGAGCTAAGAGACACATTTAAAAGTGGAAGAACTAGAAGTGTTGCATGGAGGAAAAGCCAACTTAGAGCCATGA TTGAGTTTGTCCAAGATAATGAAGAGGAAATGTTCAAGGTACTTGATCAAGATTTGGGAAAGCACCCCGTCGAAGCTTACAGGGATGAGGTTGGAGTAGT AGCAAAATCAGCCAAGCTTTCTTTGAGCTGTGTGGAGAAATGGATGGCTCCTAAAAAGGGCAATTTACCCCTGGCTTTCTTCCCTGCAAGTGCAGAAGTG ATGCCCGAACCATTTGGTGTCGTCCTCATAATGGGATCTTGGAACTTCCCTATCTCATTGACATTGGATCCATTAATAGGAGCAATATCTGCAGGAAACG TTGTGGTTTTAAAACCTTCTGAGCTATCACCAGCATGTTCTTCTTTTCTTGCTGAGGCTATCCCTAAATACCTGGATCCCAAATCCATTAAGGTCATTGA GGGCGGAATAGATGTTTGCGAACAACTTCTACAGCAGAATTGGGACAAGATATTCTTCACTGGTAGTCAGCGTGTGGGACGCATCGTAATGACTGCGGCT GCACAGCATTTAACACCAGTTACACTTGAGCTGGGAGGAAAAAGTCCTGCCATCTTGGACAGCAGCTCCAATCCCACCAATATGAAGGTAATAGCCAAAA GAATAGTAGCAGCGAAATGGGGGTCGTGCAGTGGGCAAGCATGTATTGCCATTGACTATATGCTTGTAGAAGAGAAATTCGCTTCTTATCTGATAGACTT GCTAGAGAAAACAATCAAGCAATTCTTTGGTGAAAATCCAAGAGAATCAAAGAGCTTATGCAAAATTCTAAACAAGAACAACTTCATGAGGTTGCTTGAC CTTCTTAAAGACCCTCTTATTAGAGCTTCTGTTGTTTACGGTGGTTCTGTAGATGAAGAAACAATGTACATTGAGCCCACAATCTTGCTAAATCCTCCCC TCGATTCTCAGATCATGACAGAAGAAATCTTTGGCCCCTTGCTTCCAATTATCACACTGAATAATATTCATGATAGCATTGAGTTCATAAGCTCCAGGCC AAAACCTCTTGCCATTTATGCCTTCACTAGGGATGAAACATTCAAGAAACAAATTCTATCAAAAACATCCTCCGGAAGTGTGACTTTCAACGACACCCTG CTTCAATTTGTATGTGATTCTCTACCATTTGGAGGTGTTGGTCAAAGTGGCTTCGGAAGATACCACGGGAAGTACTCTTTCGATACTTTCAGTCATGAAA AAGCAATCTTGCAAAGACGTTTCTTCCCTGAGCTTGAGCCCAGGTATCCACCATGGAATAACTTAAAGTTTCAATTCATCAAATTGCTCTACGCCTTCAA CTACATTGGATTATTATTGCTGCTTCTGGGATTGAAGAAGTAG
AA sequence Show only first row Show all	>Potri.007G017100.1 pacid=42764821 polypeptide=Potri.007G017100.1.p locus=Potri.007G017100 ID=Potri.007G017100.1.v4.1 annot-version=v4.1 MEGLEGTLAELRDTFKSGRTRSVAWRKSQLRAMIEFVQDNEEEMFKVLDQDLGKHPVEAYRDEVGVVAKSAKLSLSCVEKWMAPKKGNLPLAFFPASAEV MPEPFGVVLIMGSWNFPISLTLDPLIGAISAGNVVVLKPSELSPACSSFLAEAIPKYLDPKSIKVIEGGIDVCEQLLQQNWDKIFFTGSQRVGRIVMTAA AQHLTPVTLELGGKSPAILDSSSNPTNMKVIAKRIVAAKWGSCSGQACIAIDYMLVEEKFASYLIDLLEKTIKQFFGENPRESKSLCKILNKNNFMRLLD LLKDPLIRASVVYGGSVDEETMYIEPTILLNPPLDSQIMTEEIFGPLLPIITLNNIHDSIEFISSRPKPLAIYAFTRDETFKKQILSKTSSGSVTFNDTL LQFVCDSLPFGGVGQSGFGRYHGKYSFDTFSHEKAILQRRFFPELEPRYPPWNNLKFQFIKLLYAFNYIGLLLLLLGLKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Potri.007G017100 [exp]	0	1	Pt-ALDH3.2
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Potri.007G102100 [exp]	1.00	0.8106
AT2G23970			Class I glutamine amidotransfe...		Potri.009G078200 [exp]	6.48	0.6785
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Potri.016G048500 [exp]	8.48	0.6865
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Potri.010G093400 [exp]	9.69	0.7901	ATHB13.3
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Potri.018G149900 [exp]	10.81	0.6124
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.004G078200 [exp]	10.95	0.7141
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Potri.002G108000 [exp]	17.97	0.6398	Pt-IAA8.4
AT1G54200			unknown protein		Potri.001G170500 [exp]	25.69	0.6392
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.001G155100 [exp]	30.62	0.6440	HAT1.3
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Potri.007G018400 [exp]	35.70	0.6995	ROT3.1

Compare expression of checked genes

Potri.007G017100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.