Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51070 961 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G64030 870 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29470 842 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 841 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G40280 597 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G56080 569 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19430 543 / 2e-180 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 491 / 5e-161 Putative methyltransferase family protein (.1) AT2G39750 481 / 7e-157 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G77260 471 / 8e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G118100 [exp] 1209 / 0 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G104000 [exp] 895 / 0 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G065200 [exp] 890 / 0 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G184500 [exp] 870 / 0 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G075800 [exp] 849 / 0 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G185000 [exp] 599 / 0 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G260600 [exp] 538 / 3e-178 AT1G19430 953 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 486 / 2e-159 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 486 / 4e-159 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028354 [exp] 996 / 0 AT3G51070 1051 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041804 [exp] 983 / 0 AT3G51070 1034 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014274 [exp] 975 / 0 AT3G51070 1041 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10025976 [exp] 936 / 0 AT3G51070 964 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042767 [exp] 862 / 0 AT1G29470 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10029736 [exp] 860 / 0 AT1G29470 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10018954 [exp] 855 / 0 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028650 [exp] 847 / 0 AT1G29470 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020894 [exp] 833 / 0 AT5G64030 1019 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019644 [exp] 795 / 0 AT5G64030 922 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.007G017400.3 pacid=42765313 polypeptide=Potri.007G017400.3.p locus=Potri.007G017400 ID=Potri.007G017400.3.v4.1 annot-version=v4.1 ATGGCTAGGCTTCGAAGTAGCAAGCGTAATTCTTCCTCTAGATCATACACATCAACACTAACCACCATAGCCTTCATAGCATTGTGTGCTATAGGTGTTT GGATGCTAACTTCAAACCCACAGGTTACTCCACAAACCACAACTCACGTCGCCAAACCAGTCATTACCACCACCACTGACATTGCCGCCGACGCGGATGT TTCAATCTCCAATGAGGTAGAACACACTGAATCCAGGAGCAAAAAGGACACCCATGTTTATGAAGACAATCCAGGAGATCTTCCCGATGATGCTATCAAA TCCGACGAGCTTAAAAGCAATGATGACAGTGACAATAAAGAAGAAAGTAACTACGGGAAACAGGAAACGGATGGTGGTGATAGTAAGGCTGATCAAGAGA GCTCATCACAGGATTTAAAGGGAGAAGGATCTGGTGAGGAGCAGCAGAAACAGGAGGAAAGACAGAATCAGATATCTGAAGAAAGTTCACACACTCAAAA TCGACAAGCTGATCAAACCAGCCAAGAAAGTTCTCAATCTGAAGGTAGCCAGGAAGCAAGTGTCAATCAAGAACAAGAAACAAATGCCAGCCAAGAAGAA AAAACGAATGACAATCAAGAACAAGAGCAAAGTACAGTATCTGAAACTGATGATAGTAATTCACATGATTCTATAAATAAGAATGAAGAACAAGATCAAG CACAACAGCAACAGCAACAGCAACAAGAAGATGTCGAAAACAGTAGTAAGGATTTACAGGATTCTCAGAACCAAGAATCAAAAGAAGACCAACAACAAGG TTCTGGACTCGATGAAAACAATCAAGAATCTGATCACAATGAGAAAACATATGAAGAGCAACAACAAGAGCAAAGAATAGAAGATACTGGAGGTCAGAAT TCTTCTCAAGAATCCCAAAAAGAGGTATCTGAAGAAGATAAAAAACAAAGAATACAACAGCAGCAGCAGCAACAACAAAAACAAGATGTTGAAGATAGTA GTAAGGATTTACAGGATTCTCAGAACCAAGAATCGAAAGAAGACGAGCAACAACAAGGTTCTGGACTCAATGAAAACAATCAAGAATCGAATCAAAATGA AAAACCATTTGAAGACCAACAACAACAAGATAGTACTGTAATCAATGAAAGCAATCAAGAATCTGATCAAAATGAGAAAACTTATGATGAGCAACAACAA GAGCAAAGACAAGAGGATACTGAGGTTCATGATTCTTCTCAAGAATCCCAAAATGAGGTATCTGAAGAAGATCAAAAACAAAGAATACAACAGCAGCAGC AGCAGCAACAGCATCAACAAACACATGATCAAGAAACCGAACAAGAATCTCAGGTGGATAGCAACACAAACCAAGAAACCAAGCAGGAATCAAGCTCGGG CGAGTCAGCATTTCCAGGTGGCGGGAACCCAGGAATACCAAAAGAATCAAAGGAGTCATGGTCAACTCAAGCAGCAGAGTCAGAGAATCAAAAGGAGAGA AGGAAGGAGGAATCAGACGGTAATGACAGCATGTATGGGTACACTTGGCAGCTCTGTAATGTCACTGCAGGTCCTGATTATATACCTTGTTTAGATAATG AAAAGGCCTTAAGACAACTACATACAACCGGACACTTTGAACATAGAGAGAGGCATTGTCCTGAGCTTGGACCCACTTGTTTGGTTCCACTTCCTCAAGG TTACAAAAGACCCATCACATGGCCTCAAAGTAGAGACAAGATATGGTATCACAATGTACCTCATCCAAAATTGGCAGAGGTCAAAGGTCATCAAAATTGG GTTAAGGTTACTGGTGAGTTCTTGACCTTCCCTGGTGGTGGAACTCAGTTCATACATGGAGCTCTTCACTATATTGATTTTGTTCAACAGGCTGTGCCCA AAATTAAATGGGGAAAGCACACTAGAGTGATACTGGATGTTGGGTGTGGAGTTGCAAGCTTTGGTGGTTATAATTTTGAAAGGGATGTTCTTACAATGTC TTTTGCACCCAAAGATGAACATGAAGCTCAAGTCCAATTTGCCCTTGAAAGAGGAATACCTGCAATATCTGCTGTCATGGGTTCCCAGCGTCTCCCGTTC CCTAGTAGGGTCTTTGATCTCATCCACTGTGCGCGTTGTCGAGTCCCTTGGCATGCAGAAGGTGGCAAGCTACTTTTAGAATTGAATCGCCTTCTCCGGC CTGGAGGTTATTTTGTCTGGTCAGCAACTCCTGTTTACCAAAAGCTTCAGGAAGATGTGGAGATATGGCAAGCTATGTCTGCGTTGACGGTATCTATGTG TTGGGAGCTTGTGACTATCAAGAAAGATAAACTTAACGGTATCGGTGCTGCCATCTACAGAAAACCTACCACAAATAATTGCTATGATCAAAGAATCAAG AACAGCCCTCCAATGTGTGATAATGATGACGATGCAAATGCTGCCTGGTATGTGCCTCTGCAGGCATGCATGCACCGGGTACCTCGTTCTAAATCTCAGA GAGGGGGTAAATGGCCAGAGGATTGGCCTGAAAGACTACAAATACCTCCTTACTGGCTAAAGAGCTCTCAGATGGGGATCTATGGTAAGCCAGCTCCTCA AGATTTTGAAGCAGATTATGAACATTGGAAACATGTCGTCAGCAACTCATACATGAAGGGATTGGGTATCAGCTGGTCCAACGTCAGGAATATAATGGAT ATGAGAGCCGTTTATGGGGGGTTTGCAGCAGCTCTCAAGGATCTTAAGGTCTGGGTGTTCAATGTAGTGAACACAGACTCTCCAGATACACTACCGATAA TTTATGAGAGAGGTCTTTTTGGGATATACCATGATTGGTGCGAATCCTTCAGCACATACCCTCGAACTTACGACCTCCTACATGCTGATCATCTCTTCTC AAAGCTGAAAAAAAGGTGCCAGCTTGCTCCTGTATTGGCAGAAGTTGATAGAATCGCAAGACCTGGAGGTAAACTGATTGTTCGTGATGAGTCAAGTGCA ATTGAGGAAGTGGAGAACTTGTTGAAGTCTCTGCATTGGGAGGTTCATCTAATCTTCTCCAAGGACCAAGAAGGTTTACTCAGCGCACAAAAAGGTGAAT GGCGACCACAGACATATGCAGCTTTCACCTGA
AA sequence Show only first row Show all	>Potri.007G017400.3 pacid=42765313 polypeptide=Potri.007G017400.3.p locus=Potri.007G017400 ID=Potri.007G017400.3.v4.1 annot-version=v4.1 MARLRSSKRNSSSRSYTSTLTTIAFIALCAIGVWMLTSNPQVTPQTTTHVAKPVITTTTDIAADADVSISNEVEHTESRSKKDTHVYEDNPGDLPDDAIK SDELKSNDDSDNKEESNYGKQETDGGDSKADQESSSQDLKGEGSGEEQQKQEERQNQISEESSHTQNRQADQTSQESSQSEGSQEASVNQEQETNASQEE KTNDNQEQEQSTVSETDDSNSHDSINKNEEQDQAQQQQQQQQEDVENSSKDLQDSQNQESKEDQQQGSGLDENNQESDHNEKTYEEQQQEQRIEDTGGQN SSQESQKEVSEEDKKQRIQQQQQQQQKQDVEDSSKDLQDSQNQESKEDEQQQGSGLNENNQESNQNEKPFEDQQQQDSTVINESNQESDQNEKTYDEQQQ EQRQEDTEVHDSSQESQNEVSEEDQKQRIQQQQQQQQHQQTHDQETEQESQVDSNTNQETKQESSSGESAFPGGGNPGIPKESKESWSTQAAESENQKER RKEESDGNDSMYGYTWQLCNVTAGPDYIPCLDNEKALRQLHTTGHFEHRERHCPELGPTCLVPLPQGYKRPITWPQSRDKIWYHNVPHPKLAEVKGHQNW VKVTGEFLTFPGGGTQFIHGALHYIDFVQQAVPKIKWGKHTRVILDVGCGVASFGGYNFERDVLTMSFAPKDEHEAQVQFALERGIPAISAVMGSQRLPF PSRVFDLIHCARCRVPWHAEGGKLLLELNRLLRPGGYFVWSATPVYQKLQEDVEIWQAMSALTVSMCWELVTIKKDKLNGIGAAIYRKPTTNNCYDQRIK NSPPMCDNDDDANAAWYVPLQACMHRVPRSKSQRGGKWPEDWPERLQIPPYWLKSSQMGIYGKPAPQDFEADYEHWKHVVSNSYMKGLGISWSNVRNIMD MRAVYGGFAAALKDLKVWVFNVVNTDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKLKKRCQLAPVLAEVDRIARPGGKLIVRDESSA IEEVENLLKSLHWEVHLIFSKDQEGLLSAQKGEWRPQTYAAFT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51070			S-adenosyl-L-methionine-depend...		Potri.007G017400 [exp]	0	1
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Potri.017G022728 [exp]	9.38	0.8576
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.003G024600 [exp]	9.48	0.8312
AT3G09110			Protein of unknown function (D...		Potri.010G210500 [exp]	9.79	0.8508
AT2G20770		GCL2	GCR2-like 2 (.1)		Potri.013G134700 [exp]	22.09	0.8314
AT1G63855			Putative methyltransferase fam...		Potri.005G109000 [exp]	23.95	0.8256
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Potri.013G147200 [exp]	25.98	0.8378
AT5G03860		MLS	malate synthase (.1.2)		Potri.012G094532 [exp]	28.28	0.8222
AT3G44830			Lecithin:cholesterol acyltrans...		Potri.009G150800 [exp]	36.74	0.8302
					Potri.010G210600 [exp]	40.49	0.7986
AT4G20930			6-phosphogluconate dehydrogena...		Potri.001G465600 [exp]	52.38	0.7874

Compare expression of checked genes

Potri.007G017400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.