Plant FIBer expression Database

Potri.007G017600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G51050 1108 / 0 FG-GAP repeat-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G118300
[exp]
1296 / 0 AT3G51050 1110 / 0.0 FG-GAP repeat-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014275
[exp]
967 / 0 AT3G51050 950 / 0.0 FG-GAP repeat-containing protein (.1)
Lus10025977
[exp]
565 / 0 AT3G51050 549 / 0.0 FG-GAP repeat-containing protein (.1)
PFAM info
Representative CDS sequence
>Potri.007G017600.8 pacid=42765818 polypeptide=Potri.007G017600.8.p locus=Potri.007G017600 ID=Potri.007G017600.8.v4.1 annot-version=v4.1
ATGAGAAAACGCGATCTAGCCATTCTCATGCTCTCCGCCTTCGCCATCTTCTTCTCTCTCCAGCACGAAGGAGATTTCTCTTTTAGAGAGGCATGGTTCC
ATTTAACCGACGATTATCCAATCAAATACGAGACCGACCGTCTTCCCCCGCCGATTGTTTCCGATCTTAACGGAGACGGCAAGAAAGAAATCCTCGTCGC
CACTCACGACGCTAAAATCCTGGTATTGGAGCCACATTCAAGGCGAGTAGATGAGGGGTTTAGTGAAACGAGATTGTTGACGGAACTATCACTATTGCCT
GATAAAACACGGGTTGCGACTGGTAGACGTGCAGTAGCTATGGCGACTGGTGTTATTGAGAGGAGATATAAGGAAGGACACCCGTTAAAGCAAGTTTTGG
TTGTTGTTACTTCAGGGTGGTCTGTTATGTGCTTTGATCATAACCTTAAGAAGCTTTGGGAAACTAATGTGCAGGAGGATTTTCCACATAATGCACATCA
TAGGGAGATTGCAATATCGATAAGTAACTATACGTTGAAGCACGGGGATATGGGATTGGTTATTATTGGTGGGAGAATGGAAGTGCAGCCACATAATTAT
TTAGATCCTTTTGAAGAAATCGGCATGGCAGAGAAAAATGCTGAGCAGCATAGAAGAAGTGCTGGTGAGAAAGAGCCATCAGAGAACTCTGGAACTGTGA
ATTTACGCCATTTTGCCTTGTATGCTTTTGCTGGTCGAACTGGTACCGTTCGATGGAGTAGAAAGAATGAGAACATTGAAGCAGAGTCTTCAGATGCTGC
ATCACAGTTGATTCCACAGCATAACTACAAGCTTGATGTGCATGCTTTAAACAGTCGTCATCCTGGAGAGTTTGAATGCAGGGAGTTTAGGGAATCAATC
CTTGGAGTTATGCCACATCACTGGGATAGGAGAGAAGATACTGTGTTGCAGCTATCACACTTTAGGCGCCACAAAAGAAAAACATCAAAAAAATCAAATG
GAAAGAACTCAAACTACCCTTTCCACAAGCCTGAGGAAAACCATCCTCCTGGAAAAGACACGACAAAGAAAATTTCAAACCTGATTGGGAAAGCTGCAAA
ATATGCTAGCTCAACAAAATCAAAGAAGCCATCACAATATATTCCTACCATAACAAACTACACTCAGCTTTGGTGGGTTCCTAATGTTGTTGTGGCTCAC
CAAAAAGAAGGGATAGAAGCTATTCATTTGGCATCTGGCCGCACCCTTTGTAAGCTTCATCTTCAAGAAGGTGGCCTTCATGCTGATATCAACGGTGATG
GAGTCCTAGATCATGTCCAGGCTGTTGGGGGAAATGGAGCTGAGAAGACTGTCGTTAGTGGAGCAATGGAAGTGCTGCAACCTTGTTGGGCTGTTGCAAC
TTCAGGTGTACCAGTACGAGAGCAACTTTTTAATGCTTCTATATGTCATCATTCGCCATTTAACTTATTCCAACATGGAGATTTCGGCAGAAATTTTGGT
CGAACTGATGTATCTTCTTTAGAGGTGGCAACCCCTATTCTCATCCCAAGAAGTGATGGCCATAGGCATCGCAAGGGGAGTCATGGTGATGTTGTCTTCT
TAACAAATCGAGGGGAGGTGACATCATACTCTCCTGGCCTGCATGGCCACGATGCTGTTTGGCAATGGCAAATACTGACAGGCGCTACATGGTCAAATCT
TCCTTCTCCATCAGGGATGATGGAAGGTGGTATGGTGGTCCCCACATTAAAGGCATTCTCTTTGCGTGCACATGACAATCAACAAATGATCCTCGCAGCT
GGTGATCAAGAGGCTGCAGTTATATCTCCTGGAGGAAGTGTCCAGACATCGTTTGATCTTCCTGCACCACCCACCCATGCTCTGATCTGTGAGGATTTCA
CAAATGACGGCCTTACCGACCTAATTGTTGTGACATCAAATGGGGTGTATGGCTTTGTCCAGACTAGGTCACCAGGTGCCCTCTTCTTCAGCACACTGGT
CGGTTGCCTTTTAATTGTGATGGGAGTTATCTTTGTCACCCAACACATAAACTCCATAAAGGGGAAACCACGCGCTTCATCTGGTCTTCGATGA
AA sequence
>Potri.007G017600.8 pacid=42765818 polypeptide=Potri.007G017600.8.p locus=Potri.007G017600 ID=Potri.007G017600.8.v4.1 annot-version=v4.1
MRKRDLAILMLSAFAIFFSLQHEGDFSFREAWFHLTDDYPIKYETDRLPPPIVSDLNGDGKKEILVATHDAKILVLEPHSRRVDEGFSETRLLTELSLLP
DKTRVATGRRAVAMATGVIERRYKEGHPLKQVLVVVTSGWSVMCFDHNLKKLWETNVQEDFPHNAHHREIAISISNYTLKHGDMGLVIIGGRMEVQPHNY
LDPFEEIGMAEKNAEQHRRSAGEKEPSENSGTVNLRHFALYAFAGRTGTVRWSRKNENIEAESSDAASQLIPQHNYKLDVHALNSRHPGEFECREFRESI
LGVMPHHWDRREDTVLQLSHFRRHKRKTSKKSNGKNSNYPFHKPEENHPPGKDTTKKISNLIGKAAKYASSTKSKKPSQYIPTITNYTQLWWVPNVVVAH
QKEGIEAIHLASGRTLCKLHLQEGGLHADINGDGVLDHVQAVGGNGAEKTVVSGAMEVLQPCWAVATSGVPVREQLFNASICHHSPFNLFQHGDFGRNFG
RTDVSSLEVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTSYSPGLHGHDAVWQWQILTGATWSNLPSPSGMMEGGMVVPTLKAFSLRAHDNQQMILAA
GDQEAAVISPGGSVQTSFDLPAPPTHALICEDFTNDGLTDLIVVTSNGVYGFVQTRSPGALFFSTLVGCLLIVMGVIFVTQHINSIKGKPRASSGLR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G51050 FG-GAP repeat-containing prote... Potri.007G017600
[exp]
0 1
AT4G01400 unknown protein Potri.014G105900
[exp]
6.48 0.7841
AT3G04800 ATTIM23-3 translocase inner membrane sub... Potri.005G051800
[exp]
16.73 0.7396
AT4G27220 NB-ARC domain-containing disea... Potri.011G127300
[exp]
20.00 0.7383
AT3G19780 unknown protein Potri.007G070400
[exp]
24.24 0.7298
AT1G15780 unknown protein Potri.003G014156
[exp]
24.26 0.7006
AT3G54620 bZIP BZO2H4, ATBZIP2... BASIC LEUCINE ZIPPER O2 HOMOLO... Potri.002G045800
[exp]
27.01 0.6633
AT4G17950 AT-hook AT hook motif DNA-binding fami... Potri.003G090900
[exp]
29.94 0.7287
Potri.019G023500
[exp]
33.04 0.7078
AT1G10270 GRP23 glutamine-rich protein 23 (.1) Potri.003G002950
[exp]
38.34 0.7368
AT4G38200 SEC7-like guanine nucleotide e... Potri.009G169800
[exp]
38.53 0.7252

Potri.007G017600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.