Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75500 413 / 6e-144 WAT1 Walls Are Thin 1 (.1.2) AT3G53210 394 / 9e-137 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 321 / 5e-108 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G08290 218 / 2e-67 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT2G39510 210 / 8e-65 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 205 / 2e-62 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G30420 201 / 2e-61 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 199 / 3e-60 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 191 / 5e-57 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G45370 190 / 6e-57 nodulin MtN21 /EamA-like transporter family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G029100 [exp] 439 / 3e-154 AT1G75500 578 / 0.0 Walls Are Thin 1 (.1.2) Potri.005G233600 [exp] 436 / 4e-153 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.015G042900 [exp] 341 / 6e-116 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.011G148400 [exp] 222 / 2e-69 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 220 / 2e-68 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 211 / 5e-65 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.006G033500 [exp] 210 / 3e-64 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 206 / 6e-63 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G165600 [exp] 203 / 4e-62 AT5G07050 281 / 4e-92 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024301 [exp] 400 / 5e-138 AT1G75500 575 / 0.0 Walls Are Thin 1 (.1.2) Lus10041801 [exp] 382 / 1e-132 AT1G75500 365 / 6e-126 Walls Are Thin 1 (.1.2) Lus10028351 [exp] 345 / 7e-119 AT3G53210 311 / 1e-105 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10010647 [exp] 346 / 8e-118 AT1G75500 492 / 6e-175 Walls Are Thin 1 (.1.2) Lus10027251 [exp] 337 / 7e-114 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10038959 [exp] 334 / 4e-113 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10028030 [exp] 215 / 2e-66 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10003738 [exp] 214 / 2e-66 AT4G08300 453 / 6e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 204 / 4e-62 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 200 / 1e-60 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.007G017800.1 pacid=42766679 polypeptide=Potri.007G017800.1.p locus=Potri.007G017800 ID=Potri.007G017800.1.v4.1 annot-version=v4.1 ATGGCTGCGCCTGGTACTTCTGCATCCGCTAAGAGGATGTTTGCAGTGTCTGAAGGTGCCAAGCTGCACTTAGCCATGACAATCTTTCAGTTTGTTTATG CAGGGAACCATGTGATCATGAGAGCTGCACTTAACATGGGTGTAAGCAAGCTTGTTTTCCCCATTTATAGGAATATTATTGCTCTGGTTCTGCTGGTTCC TTTCGCTTATTTCATAGAGAGGAAAGACAGGCCACCACTAACCCTTTCTCATCTGATACAGTTCTTCCTCCTTGGATTTCTAGGGATAACACTCAATCAA GGATTTTACCTTTTTGGTTTGGACAACACCTCACCTTCATTTGCTTCTGCTACAGAGAATGTTGTGCCTGCTGTGACCTTTATCTTGGCCACCTTAATCA GATTAGAGCAAGTTCACCTGAACCGTAGAGATGGCATAGCCAAGGTGCTTGGTACTCTAACTTCCTTCATTGGGGCTTCTGTCATAACTCTTTATAAGGG ACCAATAATTTATAGCCCAAATCCACCTTCAGACCAATCAGATTTGATGTTTGCATTAGGAGATGCCAAGGAAAAGAACTGGACCTTGGGCTGTATCTGT TGTTTTGGCCATTGCCTATGTTGGGCGAGCTGGATTGTGTTACAGGCAGTTGTCTTGAAGAAGTACCCAGCTCGGTTTTCAGTTTATTCGTTTACTTGCT TCTTCAGTATCTTGCAATTTCTGGCAATTGCAGGGTATTTTGAGAGAGATTCCTGGGCATGGCATGTTCACTCTGTTGGTGAACTCTTCACCATTTTCTA TGCGGGGCTGGTTGTTTCAGGGATTGGATTTGCAATACAAATATGGGTCATACAGAGACGTGGACCGGTGTTTGTTTCAGGCTATCTGCCTCTACAGACC ATGCTCGTAGCTGTAATGGCATCTATTGCTTTAAGTGAAGAATTCTACTTGGGAGGAATGATTGGAGCAATGCTAATTATAGCTGGGCTTTACCTGGTTG TTTGGGGAAAAAGCGAAGAGACCAAGCTTGCCACAGCAAAGGATGCGATCATGTTATCATCTGACGACAGTCAGGCAAGATTTCCAGGCAAATCCTCTCT GGTCCAACCGTTACTT
AA sequence Show only first row Show all	>Potri.007G017800.1 pacid=42766679 polypeptide=Potri.007G017800.1.p locus=Potri.007G017800 ID=Potri.007G017800.1.v4.1 annot-version=v4.1 MAAPGTSASAKRMFAVSEGAKLHLAMTIFQFVYAGNHVIMRAALNMGVSKLVFPIYRNIIALVLLVPFAYFIERKDRPPLTLSHLIQFFLLGFLGITLNQ GFYLFGLDNTSPSFASATENVVPAVTFILATLIRLEQVHLNRRDGIAKVLGTLTSFIGASVITLYKGPIIYSPNPPSDQSDLMFALGDAKEKNWTLGCIC CFGHCLCWASWIVLQAVVLKKYPARFSVYSFTCFFSILQFLAIAGYFERDSWAWHVHSVGELFTIFYAGLVVSGIGFAIQIWVIQRRGPVFVSGYLPLQT MLVAVMASIALSEEFYLGGMIGAMLIIAGLYLVVWGKSEETKLATAKDAIMLSSDDSQARFPGKSSLVQPLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Potri.007G017800 [exp]	0	1
AT1G18870		ATICS2, ICS2	ARABIDOPSIS ISOCHORISMATE SYNT...		Potri.012G070000 [exp]	3.87	0.8975
AT3G46640	GARP	PCL1, LUX	PHYTOCLOCK 1, LUX ARRHYTHMO, H...		Potri.009G035000 [exp]	5.19	0.8811
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Potri.004G209900 [exp]	5.74	0.8997
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Potri.002G252800 [exp]	6.32	0.8854	Pt-PIL5.1
AT3G14760			unknown protein		Potri.011G103500 [exp]	8.36	0.8795
					Potri.015G043301 [exp]	8.94	0.8639
AT1G03670			ankyrin repeat family protein ...		Potri.018G077250 [exp]	10.95	0.8754
AT1G03670			ankyrin repeat family protein ...		Potri.018G078450 [exp]	11.22	0.8972
AT4G19160			unknown protein		Potri.001G193400 [exp]	14.07	0.8769
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Potri.006G233800 [exp]	14.83	0.8044	ELF3.3

Compare expression of checked genes

Potri.007G017800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.