Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51040 280 / 5e-96 RTH RTE1-homolog (.1.2.3) AT2G26070 212 / 7e-69 RTE1 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G229900 [exp] 221 / 2e-72 AT2G26070 360 / 3e-127 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1) Potri.018G053900 [exp] 220 / 3e-72 AT2G26070 330 / 4e-115 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041800 [exp] 306 / 2e-106 AT3G51040 294 / 1e-101 RTE1-homolog (.1.2.3) Lus10028350 [exp] 303 / 4e-105 AT3G51040 294 / 1e-101 RTE1-homolog (.1.2.3) Lus10030001 [exp] 202 / 9e-65 AT2G26070 276 / 5e-94 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1) Lus10035322 [exp] 0 / 1 AT2G26070 176 / 3e-52 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05608 [poplar] [flax] DUF778 Protein of unknown function (DUF778)
Representative CDS sequence Show only first row Show all	>Potri.007G017900.4 pacid=42764929 polypeptide=Potri.007G017900.4.p locus=Potri.007G017900 ID=Potri.007G017900.4.v4.1 annot-version=v4.1 ATGGGAGAGAACGTGGGCAAGGGGAATGAGATGAAAATGATTTTTGATGATGAAGATTTTGGAGAGAGTAAGCAGCAGCTGCAGAAGATTGATCCTAGAA AAGCTCGGTTTCCGCATTGCATTGTGTGGACACCGCTTCCTGTCATATCATGGTTGATTCCCTTCATTGGCCATGTTGGTATCTGTAGAGAGGATGGAGT TATTCTGGATTTCGCTGGCCCTAATTTTGTTTGCGTTGATAATTTCACCTTCGGAGCTGTTGCTCGCTACATCCAGATCAACAAAGATAAGGACTGTTCC ATGTCTCTCCTTCCTACTGTATTCAACAATGGGGATCAATACGAGGATGAACCTGGTACAGATGCGTTGGCGTGGGATGATGCTATACGAAAGGGCACAC AGGAATTCCAACATCACTCCTACAGCCTGTTCACTTGCAATTGCCACTCATTTGTTGCCAACAATTTGAACCGATTGGGGTTTCATTCTGGTGGGTGGAA TGTGGTGAACCTTGCTACTTTGATTTTCCTCAAGGGTCGTTGGGTGAGTACTGGAGCTATGGTGCGATCTTTCTTGCCATTTGTTGTTGTATGTGGTTTT GGGCTCATATTTGGTGGTATGACCTTTCTAACATTTTTGGCCTTCTTTACTTTCCTTCTTGTTGGTTGGTTTCTTCTTGGTACCTATTGTTTCAAGGATT TGATCCAGTTGTAG
AA sequence Show only first row Show all	>Potri.007G017900.4 pacid=42764929 polypeptide=Potri.007G017900.4.p locus=Potri.007G017900 ID=Potri.007G017900.4.v4.1 annot-version=v4.1 MGENVGKGNEMKMIFDDEDFGESKQQLQKIDPRKARFPHCIVWTPLPVISWLIPFIGHVGICREDGVILDFAGPNFVCVDNFTFGAVARYIQINKDKDCS MSLLPTVFNNGDQYEDEPGTDALAWDDAIRKGTQEFQHHSYSLFTCNCHSFVANNLNRLGFHSGGWNVVNLATLIFLKGRWVSTGAMVRSFLPFVVVCGF GLIFGGMTFLTFLAFFTFLLVGWFLLGTYCFKDLIQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51040		RTH	RTE1-homolog (.1.2.3)		Potri.007G017900 [exp]	0	1
AT5G20165			unknown protein		Potri.010G058300 [exp]	1.41	0.9133
AT5G01460			LMBR1-like membrane protein (....		Potri.016G116200 [exp]	10.58	0.8940
AT4G20410		GAMMA-SNAP, GSN...	gamma-soluble NSF attachment p...		Potri.011G155200 [exp]	14.14	0.8744	Pt-GSNAP.1
AT5G01460			LMBR1-like membrane protein (....		Potri.006G100200 [exp]	15.49	0.8949
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.009G028200 [exp]	16.12	0.8856	Pt-ADF1.1
AT5G11960			Protein of unknown function (D...		Potri.018G060500 [exp]	17.14	0.9044
AT5G64180			unknown protein		Potri.015G005600 [exp]	20.68	0.8951
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Potri.001G343400 [exp]	21.33	0.8950
AT1G63120		ATRBL2	RHOMBOID-like 2 (.1)		Potri.001G108700 [exp]	21.42	0.8908
AT4G32530			ATPase, F0/V0 complex, subunit...		Potri.006G248700 [exp]	21.97	0.8784

Compare expression of checked genes

Potri.007G017900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.