Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-BGAL3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36360 1499 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT3G13750 1173 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT1G45130 1113 / 0 BGAL5 beta-galactosidase 5 (.1) AT4G26140 981 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT3G52840 964 / 0 BGAL2 beta-galactosidase 2 (.1) AT5G56870 938 / 0 BGAL4 beta-galactosidase 4 (.1) AT2G28470 937 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT2G32810 845 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT5G63810 773 / 0 BGAL10 beta-galactosidase 10 (.1) AT5G20710 767 / 0 BGAL7 beta-galactosidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G232600 [exp] 1379 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.004G159800 [exp] 1175 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.003G038500 [exp] 1160 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.006G144500 [exp] 1155 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 1153 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.009G012400 [exp] 934 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.007G099800 [exp] 918 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.011G044300 [exp] 875 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.017G057900 [exp] 856 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041798 [exp] 1549 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10025980 [exp] 1490 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10028348 [exp] 1446 / 0 AT4G36360 1348 / 0.0 beta-galactosidase 3 (.1.2) Lus10037644 [exp] 1174 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10015625 [exp] 1172 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000701 [exp] 1168 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10024292 [exp] 1137 / 0 AT1G45130 1128 / 0.0 beta-galactosidase 5 (.1) Lus10000803 [exp] 1058 / 0 AT1G45130 1050 / 0.0 beta-galactosidase 5 (.1) Lus10006009 [exp] 956 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10028848 [exp] 952 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01301 [poplar] [flax] Glyco_hydro_35 Glycosyl hydrolases family 35 CL0058 [poplar] [flax] PF02140 [poplar] [flax] Gal_Lectin Galactose binding lectin domain
Representative CDS sequence Show only first row Show all	>Potri.007G018100.1 pacid=42766429 polypeptide=Potri.007G018100.1.p locus=Potri.007G018100 ID=Potri.007G018100.1.v4.1 annot-version=v4.1 ATGGGAACTAACTCAGCTTACAAGTTGTGTAGTTTGGTATTTTTGGTTGTGTTTTTGGGATGTTCTGAGTTGATCCAGTGTAGTGTGACTTATGATAGAA AGGCAATCATGATTAATGGCCAAAGAAGAATTCTTTTCTCTGGTTCTATTCACTACCCAAGAAGCACTCCTGATATGTGGGAAGATCTGATACAGAAGGC AAAAGATGGAGGGATTGATGTGATTGAGACATATGTGTTTTGGAATGTGCATGAGCCTACTCCTGGAAATTACCACTTTGAAGGGAGATATGATATTGTG AGGTTCATGAAGACAATACAGAGAGCTGGCCTCTATGCCCATCTCCGCATTGGACCTTATGTTTGTGCAGAATGGAATTTTGGAGGGTTTCCTGTTTGGC TAAAGTATGTTCCAGGCATCAGCTTTAGAACAGACAACGAGCCTTTCAAGAGGGCAATGCAAGGGTTCACTGAGAAGATTGTCGGATTAATGAAGGCTGA ACATTTGTTTGAATCCCAGGGTGGCCCCATTATACTCTCACAGATTGAGAATGAGTATGGCGTACAAAGTAAGTTATTTGGTGCTGCTGGTTATAATTAT ATGACATGGGCTGCAAATATGGCCATACAAACAGGAACTGGAGTTCCCTGGGTGATGTGCAAGGAAGATGATGCCCCGGATCCAGTGATAAACACATGCA ATGGTTTTTACTGTGATTCGTTTGCTCCTAACAAACCTTACAAGCCGACAATTTGGACAGAGGCCTGGAGTGGATGGTTCTCAGAGTTTGGTGGTACAAT TCACCAGCGTCCTGTTCAAGATTTGGCATTTGCAGTTGCTAAATTCATACAGAAAGGAGGATCCTTCATTAATTACTACATGTTCCATGGAGGGACCAAC TTTGGTCGCAGTGCTGGAGGGCCTTTCATTACTACCAGCTATGACTACGATGCTCCAATAGATGAATATGGTTTGATCAGGCAACCAAAGTATGGCCATC TAAAGGAGCTTCATAGATCCATTAAGATGTGCGAGCGAGCTTTAGTTTCAGTCGATCCCATTATCACTCAATTAGGAACCTATCAACAGGTTCATGTTTA CTCTACAGAATCAGGCGACTGTGCAGCTTTTCTTGCAAACTATGATACAAAATCTGCTGCAAGAGTGTTGTTTAACAACATGCACTATAACTTGCCTCCT TGGTCCATCAGCATCCTTCCTGACTGCAGAAATGTGGTCTTTAATACTGCTAAGGTTGGAGTTCAAACATCTCAAATGGAAATGTTGCCAACAAATGGGA TATTTTCATGGGAGAGTTACGATGAGGATATTTCTTCTCTGGATGACAGCTCAACATTCACAACTGCTGGTCTCTTGGAGCAGATAAATGTCACAAGGGA TGCCAGTGATTATCTGTGGTACATGACTAGTGTTGATATTGGATCATCTGAATCCTTCCTGCATGGAGGGGAACTCCCAACTCTCATTATTCAATCAACA GGCCATGCTGTGCATATCTTTATTAATGGACAGCTTTCAGGTTCTGCTTTTGGGACGAGAGAAAATAGGAGGTTTACTTATACTGGGAAGGTCAATCTGC GTCCTGGGACAAACAGAATTGCGTTACTGAGTGTTGCTGTTGGATTGCCGAATGTGGGTGGACACTATGAGTCCTGGAACACTGGTATCCTTGGTCCAGT TGCACTGCATGGACTTGACCAGGGAAAATGGGACTTGTCTTGGCAAAAATGGACCTACCAGGTTGGTCTGAAAGGAGAAGCCATGAATCTTCTCTCTCCA GACAGTGTTACCTCTGTTGAGTGGATGCAATCATCTTTAGCTGCACAAAGACCTCAGCCATTGACATGGCATAAGGCATATTTCAATGCACCTGAAGGAG ATGAGCCGTTGGCTTTGGACATGGAAGGTATGGGAAAGGGTCAAATATGGATTAATGGGCAAAGCATAGGAAGATACTGGACTGCATATGCTAGTGGTAA TTGCAATGGATGCAGTTATGCTGGAACATTCCGTCCTACAAAATGTCAGCTTGGGTGTGGCCAGCCCACTCAAAGATGGTACCATGTTCCTCGGTCTTGG TTGAAGCCAACCAATAATCTCTTGGTTGTTTTTGAGGAACTTGGAGGGGATCCTTCAAGAATTTCTCTTGTGAAGAGATCACTGGCCAGTGTTTGTGCTG AGGTCTCTGAATTCCACCCAACTATTAAGAACTGGCAAATTGAAAGCTATGGAAGAGCTGAAGAGTTCCACAGCCCCAAGGTTCACCTTCGGTGTAGTGT AGGCCAATCCATCACTTCCATAAAATTTGCAAGCTTTGGAACTCCTTTAGGAACTTGTGGAAGTTATCAGCAAGGAGCTTGCCATGCTTCTACCTCTTAT GCCATCCTAGAGAAGAAATGTATAGGGAAGCAGAGATGCGCCGTTACCATATCCAACAGTAACTTTGGCCAAGATCCATGTCCAAATGTAATGAAGAAGT TGTCAGTCGAAGCTGTTTGTGCCCCTACCAATTGGAGGGGTTAA
AA sequence Show only first row Show all	>Potri.007G018100.1 pacid=42766429 polypeptide=Potri.007G018100.1.p locus=Potri.007G018100 ID=Potri.007G018100.1.v4.1 annot-version=v4.1 MGTNSAYKLCSLVFLVVFLGCSELIQCSVTYDRKAIMINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGIDVIETYVFWNVHEPTPGNYHFEGRYDIV RFMKTIQRAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVGLMKAEHLFESQGGPIILSQIENEYGVQSKLFGAAGYNY MTWAANMAIQTGTGVPWVMCKEDDAPDPVINTCNGFYCDSFAPNKPYKPTIWTEAWSGWFSEFGGTIHQRPVQDLAFAVAKFIQKGGSFINYYMFHGGTN FGRSAGGPFITTSYDYDAPIDEYGLIRQPKYGHLKELHRSIKMCERALVSVDPIITQLGTYQQVHVYSTESGDCAAFLANYDTKSAARVLFNNMHYNLPP WSISILPDCRNVVFNTAKVGVQTSQMEMLPTNGIFSWESYDEDISSLDDSSTFTTAGLLEQINVTRDASDYLWYMTSVDIGSSESFLHGGELPTLIIQST GHAVHIFINGQLSGSAFGTRENRRFTYTGKVNLRPGTNRIALLSVAVGLPNVGGHYESWNTGILGPVALHGLDQGKWDLSWQKWTYQVGLKGEAMNLLSP DSVTSVEWMQSSLAAQRPQPLTWHKAYFNAPEGDEPLALDMEGMGKGQIWINGQSIGRYWTAYASGNCNGCSYAGTFRPTKCQLGCGQPTQRWYHVPRSW LKPTNNLLVVFEELGGDPSRISLVKRSLASVCAEVSEFHPTIKNWQIESYGRAEEFHSPKVHLRCSVGQSITSIKFASFGTPLGTCGSYQQGACHASTSY AILEKKCIGKQRCAVTISNSNFGQDPCPNVMKKLSVEAVCAPTNWRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Potri.007G018100 [exp]	0	1	Pt-BGAL3.1
AT5G06940			Leucine-rich repeat receptor-l...		Potri.016G051600 [exp]	2.44	0.9270
AT1G15760			Sterile alpha motif (SAM) doma...		Potri.001G204600 [exp]	3.87	0.9023
AT3G50620			P-loop containing nucleoside t...		Potri.005G136900 [exp]	4.00	0.9194
AT5G58300			Leucine-rich repeat protein ki...		Potri.019G062100 [exp]	6.48	0.8997
AT3G25130			unknown protein		Potri.002G246400 [exp]	6.48	0.9214
AT1G31335			unknown protein		Potri.003G148100 [exp]	8.24	0.9223
AT5G51560			Leucine-rich repeat protein ki...		Potri.015G130100 [exp]	10.95	0.9130
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.002G093100 [exp]	12.36	0.9131	Pt-SAH7.1
AT3G58100		PDCB5	plasmodesmata callose-binding ...		Potri.013G119500 [exp]	17.54	0.8961
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.003G112700 [exp]	17.88	0.9174	Pt-SKU5.1

Compare expression of checked genes

Potri.007G018100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.