Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ROT3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36380 627 / 0 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT3G13730 474 / 2e-164 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT5G05690 337 / 6e-111 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT3G50660 320 / 9e-104 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT1G73340 271 / 4e-85 Cytochrome P450 superfamily protein (.1) AT5G38970 260 / 2e-81 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT1G12740 256 / 7e-80 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT4G19230 254 / 8e-79 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G45340 249 / 6e-77 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT3G19270 243 / 7e-75 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G200100 [exp] 511 / 8e-179 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.003G038200 [exp] 509 / 4e-178 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.008G067500 [exp] 351 / 1e-116 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.010G189800 [exp] 350 / 5e-116 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.007G026500 [exp] 322 / 6e-105 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.005G124000 [exp] 313 / 2e-101 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.014G171700 [exp] 290 / 1e-92 AT3G50660 408 / 1e-138 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.010G156800 [exp] 285 / 5e-91 AT3G30180 561 / 0.0 brassinosteroid-6-oxidase 2 (.1) Potri.003G122500 [exp] 286 / 6e-91 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041794 [exp] 647 / 0 AT4G36380 643 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10028345 [exp] 645 / 0 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10040193 [exp] 338 / 5e-111 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10014850 [exp] 333 / 3e-109 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10016065 [exp] 291 / 1e-92 AT3G50660 399 / 3e-134 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10006152 [exp] 282 / 1e-90 AT3G13730 378 / 2e-128 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Lus10024495 [exp] 282 / 1e-89 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10030404 [exp] 259 / 4e-82 AT5G05690 531 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10005075 [exp] 260 / 1e-81 AT5G38970 644 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Lus10031295 [exp] 261 / 5e-81 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.007G018400.1 pacid=42765890 polypeptide=Potri.007G018400.1.p locus=Potri.007G018400 ID=Potri.007G018400.1.v4.1 annot-version=v4.1 ATGGAATGGTTTATGGGATTTTGGATTTTGGTTGGTATCTTTGTTGGATGGTGTTGGTATAGTAAAGAGAAGAGCAGCAGCAGCAGCAGCAACAGCGACA TGAAAATGGAACAAAAGAGTGGAGTGCTTCCAAAGGGAAGCTTTGGCTGGCCTCTGATAGGAGAAACTCTTGACTTCATTGCTGCTGGCTACACTTCTCA ACCTGTTAGTTTCATGGAGAAACGCAGATCACTGTACGGGAAGGTGTTCAAAACACACATCCTGGGGACACCCATCATAGTATCAACGGATCCAGCAGTA AACAAAGTTGTTTTACAAAACCATGGCAACATTTTTATTCCTGCTTATCCTAAATCAGTCAGGGAAATATTTGGAGAATATTCTATACTTCAAACCAATG GAACTCTACAGAAGAAGGTCCATGCACTTATTGGTGGTTTCTTGAGGTCACCACAGTTCAAAACTAGAATTACCAAAGACATTGAGCACCATGTCAAACT CACCTTGACTTCTTGGAAGGACCTGCCCCTTCTATTCGTCCAAGAAGAAACCCAAAAGTTCACGTTCAAAGTCTTGGTTAAAGCATTGCTAAGTCTTGAT CCAAGTGATGATTTGGATTTTCTTAAGAGAGAATTCGATGAATTCATCAAAGGGTTGATATGTCTGCCGATCAAATTACCAGGAACAAGATTATACAAAT CCTTAAAGGCTAAAGAGAGAATATTCAAGCTAGTAAAAAAGATTGTTGAGCAAAGAAAATTGGGCTTGGAGAAATCAGAAGATCAAGAACATCAAAATAC AATCCCTAATGATGCGGTGGACGTGCTTTTACGTGACATTTCTGGTGAACAAAATGACAAGCAATCTCTATCGTTGGATTTCATCATTTCACATATTATT GAGCTGATGATCCCTGGAGAAGAAACCGTGCCCATGTCCATGACCTTAGCTGTCAAATTCCTCAGTGACTGCCCTGTCGCTCTAGAGCTATTAACGGAGG AGAACATGAAATTGAAGAGGCAGAAGACTGATTCTGGTGATGATTATTGTTGGACTGATTACATGTCCTTGCAATTTACTCAGAATGTGATAAATGAAAC TCTTAGAGTAGCAAACATAATCAATGCAGTTTGGAGGAAAGCTCTCAAGGATGTAGAGATCAAAGGAATTCTGATTCCCGAAGGATGGTGTGTCCTGACA TCTTTCAGCTCTGTACATATGGATGAAGAAAATTATGAAAACCCACATGAGTTTGATCCATGGAGATGGGAGAAAACAGGAGCTTCTGTTAAGAACAATT GCTTTACACCTTTTGGAGGTGGACAAAGGCTATGCCCTGGTCTAGAACTATCCAGGCTTGAAATCTCCATCTTCCTTCACCATCTTGTCACAACTTACAG ATGGATTGCTGAAAAGGATGACATTATTTACTTTCCAACAGTGAAGTTAAAGAAAAAGCTGCCTATCAGAGTCACCTCCATAGGCAACTCTTCATGA
AA sequence Show only first row Show all	>Potri.007G018400.1 pacid=42765890 polypeptide=Potri.007G018400.1.p locus=Potri.007G018400 ID=Potri.007G018400.1.v4.1 annot-version=v4.1 MEWFMGFWILVGIFVGWCWYSKEKSSSSSSNSDMKMEQKSGVLPKGSFGWPLIGETLDFIAAGYTSQPVSFMEKRRSLYGKVFKTHILGTPIIVSTDPAV NKVVLQNHGNIFIPAYPKSVREIFGEYSILQTNGTLQKKVHALIGGFLRSPQFKTRITKDIEHHVKLTLTSWKDLPLLFVQEETQKFTFKVLVKALLSLD PSDDLDFLKREFDEFIKGLICLPIKLPGTRLYKSLKAKERIFKLVKKIVEQRKLGLEKSEDQEHQNTIPNDAVDVLLRDISGEQNDKQSLSLDFIISHII ELMIPGEETVPMSMTLAVKFLSDCPVALELLTEENMKLKRQKTDSGDDYCWTDYMSLQFTQNVINETLRVANIINAVWRKALKDVEIKGILIPEGWCVLT SFSSVHMDEENYENPHEFDPWRWEKTGASVKNNCFTPFGGGQRLCPGLELSRLEISIFLHHLVTTYRWIAEKDDIIYFPTVKLKKKLPIRVTSIGNSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Potri.007G018400 [exp]	0	1	ROT3.1
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.006G166800 [exp]	13.45	0.8555
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G034100 [exp]	20.63	0.8535
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.018G051400 [exp]	21.63	0.8439
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Potri.006G220100 [exp]	24.73	0.8416
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Potri.017G094100 [exp]	24.89	0.8016
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008300 [exp]	25.45	0.8489
AT5G28300	Trihelix		Duplicated homeodomain-like su...		Potri.013G039100 [exp]	29.15	0.8333
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073466 [exp]	32.98	0.8370
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Potri.007G017100 [exp]	35.70	0.6995	Pt-ALDH3.2
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.003G053000 [exp]	36.12	0.8339

Compare expression of checked genes

Potri.007G018400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.