Plant FIBer expression Database

Potri.007G018500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G36390 864 / 0 Methylthiotransferase (.1)
AT1G72090 135 / 2e-33 Methylthiotransferase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G107800
[exp]
136 / 1e-33 AT1G72090 847 / 0.0 Methylthiotransferase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041793
[exp]
961 / 0 AT4G36390 913 / 0.0 Methylthiotransferase (.1)
Lus10028344
[exp]
955 / 0 AT4G36390 908 / 0.0 Methylthiotransferase (.1)
Lus10016926
[exp]
109 / 1e-24 AT1G72090 787 / 0.0 Methylthiotransferase (.1)
Lus10008262
[exp]
83 / 2e-16 AT1G72090 658 / 0.0 Methylthiotransferase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0304 CheY PF00919 UPF0004 Uncharacterized protein family UPF0004
CL0021 OB PF01938 TRAM TRAM domain
CL0036 TIM_barrel PF04055 Radical_SAM Radical SAM superfamily
Representative CDS sequence
>Potri.007G018500.1 pacid=42766296 polypeptide=Potri.007G018500.1.p locus=Potri.007G018500 ID=Potri.007G018500.1.v4.1 annot-version=v4.1
ATGGCGTCTTCTCTCGCATCATCTCTTTCAACGATCCAAAGGCGATGCTGCTGTTTAACCCTCAGGTCTCTCTCTTCAAAGAAACCACGCCCTTCTTATT
ATCATTGCTATCGACATTTCAATAAAGGACCACTCAAAAAGAGGAACTGCTCTCTCACTCTATCAAGAAACTTCTCTCAGTCTCACCTTTCTAAGAACAC
TCAAGGTCCTGGCCTTCACCACTTTGTTGCTCAAGCTGCTTCCTCAGCTTCCGCCCCCGTCTCCGCTTCTGCCTCTCAAACACAGCCCCAATTTGTGCCA
GCTATAGAAGTCCCACCAGATATTGAAATTCTGCCAAGAGGCCGTATTTATCATGAGACTTATGGGTGTCAGATGAATGTAAATGACATGGAGATTGTTC
TATCTATCATGAAGAATGCTGGATATAGTGAAATTGTGGATGTTCCTGAAAGTGCAGAGATCATATTTATTAATACATGTGCTATAAGGGACAATGCAGA
GCAAAAGGTCTGGCAGAGACTTAATTACTTTTGGTTTCTAAAGAGACACTGGAAGAGCAATGTTGCCATTGGAAGGTCACAGTCGCATCATCCACCAAAG
GTTGTTGTGTTGGGTTGTATGGCTGAGAGGTTAAAGGATAAGATATTAGATGCAGATAAGATGGTTGATGTGGTTTGTGGACCTGATGCTTATAGAGATT
TGCCACGATTACTAGAAGAGGTCGAATATGGTCAGAAAGGGATCAATACCCTTCTCTCACTTGAAGAGACTTATGCAGATATTAGTCCTGTGAGGATCTC
TAAAAATTCTATTAATGCTTTTGTGTCAGTGATGAGGGGTTGCAATAATATGTGCTCGTTTTGCATTGTTCCTTTTACTAGAGGTAGAGAGCGATCACGT
CCTGTTGAATCAATAGTGAAGGAGGTGGCAGAACTCTGGAAAGAAGGTGTGAAAGAGGTAACTCTTCTTGGCCAGAATGTAAACAGCTATAATGATGCAT
CTGAGATTGAAAAGGAAGTTGAACCTGGAACAAATTGGAAGTATAGTGATGGTTTCTCCAGCACGTGCAAGGTGAAAAGGGTAGGTTTACGTTTTTCAGA
TCTCTTGGATAGGCTTTCCACTGAATTTCCTGAAATGCGGTTCAGATACACATCACCACACCCTAAAGATTTCCCAGATGACTTATTGTATGTAATGCGG
AACAGACATAATATCTGCAAATCTATCCATTTACCTGCTCAAACTGGGAGTAGCACAGTTCTCGAAAGAATGCGTAGGGGATATACTAGAGAGGCATACT
TAGATCTTGTGCAGAAAATCAGGAGAATTATTCCAGATGTAGGGATAACCAGCGACTTCATATGTGGTTTCTGTGGAGAAACTGAAGAGGAACACCAAGA
CACACTAAGTCTTGTAAAGGCTGTTGGTTATGATATGGCATATATGTTTGCATATAGCATGAGGGAAAAAACCCATGCCCATAGGAACTATGTTGATGAT
GTCCCTGATGAGGTCAAGAAGAGGAGGCTTGCAGAACTCATTGAGGCTTTCCGTGAGAGTACAGGTCAGTGTTTTGACTCCCAGATTGGATCTGTCCAAC
TTGTTTTAGTGGAAGGGCCCAACAAGAGAGCTCCAGACACAGAACTTATTGGCAAGAGTGATAGGGGCCATAGAGTTTTATTTACCAATCTGCCACTGCC
AAATCGAAATGAGGATGGAAGTCAGGCGCGGAACCCCATGGTTGGTGATTATGTGGAAGTTCTTATATTGAAATCGACACGTGCTTCACTCTTTGGAGAT
GCGCTTGCTATTACCACATTGAGTTCATTTTACAGCAATCTTGACCAAAAAGCTGTTGCCTGTGCAAGCTGA
AA sequence
>Potri.007G018500.1 pacid=42766296 polypeptide=Potri.007G018500.1.p locus=Potri.007G018500 ID=Potri.007G018500.1.v4.1 annot-version=v4.1
MASSLASSLSTIQRRCCCLTLRSLSSKKPRPSYYHCYRHFNKGPLKKRNCSLTLSRNFSQSHLSKNTQGPGLHHFVAQAASSASAPVSASASQTQPQFVP
AIEVPPDIEILPRGRIYHETYGCQMNVNDMEIVLSIMKNAGYSEIVDVPESAEIIFINTCAIRDNAEQKVWQRLNYFWFLKRHWKSNVAIGRSQSHHPPK
VVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVEYGQKGINTLLSLEETYADISPVRISKNSINAFVSVMRGCNNMCSFCIVPFTRGRERSR
PVESIVKEVAELWKEGVKEVTLLGQNVNSYNDASEIEKEVEPGTNWKYSDGFSSTCKVKRVGLRFSDLLDRLSTEFPEMRFRYTSPHPKDFPDDLLYVMR
NRHNICKSIHLPAQTGSSTVLERMRRGYTREAYLDLVQKIRRIIPDVGITSDFICGFCGETEEEHQDTLSLVKAVGYDMAYMFAYSMREKTHAHRNYVDD
VPDEVKKRRLAELIEAFRESTGQCFDSQIGSVQLVLVEGPNKRAPDTELIGKSDRGHRVLFTNLPLPNRNEDGSQARNPMVGDYVEVLILKSTRASLFGD
ALAITTLSSFYSNLDQKAVACAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G36390 Methylthiotransferase (.1) Potri.007G018500
[exp]
0 1
AT3G16620 ATTOC120 ARABIDOPSIS THALIANA TRANSLOCO... Potri.009G131300
[exp]
3.16 0.9651
AT4G15545 unknown protein Potri.010G027400
[exp]
4.00 0.9569
AT4G37270 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY MET... Potri.007G049000
[exp]
7.68 0.9394
AT2G02070 C2H2ZnF ATIDD5 indeterminate(ID)-domain 5 (.1... Potri.010G099200
[exp]
9.53 0.9546
AT1G60000 RNA-binding (RRM/RBD/RNP motif... Potri.008G172100
[exp]
9.59 0.9636 RNP1.2
AT1G66840 PMI2, WEB2 WEAK CHLOROPLAST MOVEMENT UNDE... Potri.017G118900
[exp]
9.64 0.9610
AT2G31170 FIONA, SYCOARAT... cysteinyl t-RNA synthetase, FI... Potri.018G024300
[exp]
9.94 0.9559
AT3G53130 CYP97C1, LUT1 LUTEIN DEFICIENT 1, CYTOCHROME... Potri.006G119800
[exp]
10.00 0.9597 CYP97C4
AT2G31190 WXR1, RUS2 weak auxin response1, ROOT UV-... Potri.005G224000
[exp]
11.04 0.9387
AT3G28460 methyltransferases (.1) Potri.001G349800
[exp]
11.22 0.9539

Potri.007G018500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.