Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36400 817 / 0 D2HGDH D-2-hydroxyglutarate dehydrogenase, FAD-linked oxidases family protein (.1.2) AT5G06580 165 / 2e-44 FAD-linked oxidases family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G064800 [exp] 161 / 5e-43 AT5G06580 885 / 0.0 FAD-linked oxidases family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028342 [exp] 842 / 0 AT4G36400 788 / 0.0 D-2-hydroxyglutarate dehydrogenase, FAD-linked oxidases family protein (.1.2) Lus10041792 [exp] 733 / 0 AT4G36400 682 / 0.0 D-2-hydroxyglutarate dehydrogenase, FAD-linked oxidases family protein (.1.2) Lus10015987 [exp] 161 / 6e-43 AT5G06580 777 / 0.0 FAD-linked oxidases family protein (.1) Lus10012289 [exp] 159 / 3e-42 AT5G06580 825 / 0.0 FAD-linked oxidases family protein (.1) Lus10026471 [exp] 46 / 7e-05 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF02913 [poplar] [flax] FAD-oxidase_C FAD linked oxidases, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.007G018600.2 pacid=42766670 polypeptide=Potri.007G018600.2.p locus=Potri.007G018600 ID=Potri.007G018600.2.v4.1 annot-version=v4.1 ATGGATAAGTACAAAGTGACTCATCGCCTCCTGAAACAATCGATAAAATCACTTGTTAATCGTCAATTAACCTCCAATAATCCAATCTATCGCTCCATTT CAGCTTTGCCGCTCGGAAATGGAGGTCGGAATCCACAACTGTACAGAAGTTTCGGTTCTTTAGCGACGAAAGTTGAGAGGAATCCGTCGTTCTCGAGTCT GAATTCCGATGACGTGAGTTATTTCAAGGGAGTGTTAGGGGAGAAAAACGTGGTTCAAGATGAAGATAGATTGGAGACAGCAAATATTGATTGGATGCAT AAATATAAAGGATCCAGTAAACTATTACTCTTGCCTAGAAACACGGAGGAGGTTTCTAAGATTTTAGAATATTGTAATTCGAGGCGGTTGGCAGTTGTTC CACAAGGTGGAAATACTGGACTTGTTGGTGGAAGTGTGCCGGTTTTCGATGAGGTGATTATCAATGCGGGTTCAATGAATAAGATTATAGCTTTTGACAA GGTCAGTGGCATACTAGTTTGTGAAGCTGGATGCATATTGGAAAATCTTATTTCTTACCTGGATAACCAAGGATTTATAATGCCACTGGACTTAGGTGCA AAAGGAAGCTGCCAAATTGGTGGAAATGTTTCAACCAATGCAGGTGGTTTGCGCTTTGTCCGTTATGGCTCTCTTCATGGGAATGTACTCGGTCTTGAGG CTGTTCTGGCAAATGGCGATGTGCTTGACATGCTAGGGACATTACGTAAAGATAATACAGGGTATGACTTGAAGCATCTGTTTATAGGAAGTGAAGGTTC CTTGGGAATTGTAACTAAAGTTTCAATTCTTACTCCCCCAAAGCTATCTTCAGTGAACATAGCATTCCTTGCATGTGAAGATTATCTGAGCTGCCAAAAA CTTCTATCAGAAGCAAAGAGGAAACTTGGAGAGATTCTGTCTGCATTTGAATTTTTGGATAGCCATGCAATGGATTTGGTCCTAAACCATTTAGAAGGTG TTCGGAATCCATTGCCTTCCGCAGTACACAACTTTTATGTGCTGATCGAGACAACAGGCAGTGATGAATCTTATGACAAAGAGAAGCTTGAGGCCTTCCT GCTTCACTCAATGGAATCTGGTTTAATTTCTGATGGGGTTCTTGCTCAAGACATAAATCAGGCATCCTCATTTTGGCGTATACGCGAGGGTGTACCAGAA GCGTTGATGAGAGCAGGGCCTGTATACAAATATGATCTATCAATACCGGTCGAAAAAATGTACAGTCTTGTTGAGGACATGCGATTAAGACTCGGTCAAT CAGCCAATGTAGTGGGATATGGTCATCTTGGAGATGGCAATTTGCATTTAAACATTTCAGCACCGCGATACGATGATACGATTTTAGCACAAATTGAACC CTACGTATATGAGTGGACATCTAAGCACCGGGGGAGTATAAGTGCAGAGCATGGCCTGGGACTGATGAAAGCCAATGAGATATTCTATAGCAAGTCACAT GAAACTGTGCAACTGATGGCTTCTATCAAGAAATTGCTGGACCCCAATGGAATCCTTAACCCATATAAAGTTCTTCCTCACTCACTCTGCTCTTACAGCT AA
AA sequence Show only first row Show all	>Potri.007G018600.2 pacid=42766670 polypeptide=Potri.007G018600.2.p locus=Potri.007G018600 ID=Potri.007G018600.2.v4.1 annot-version=v4.1 MDKYKVTHRLLKQSIKSLVNRQLTSNNPIYRSISALPLGNGGRNPQLYRSFGSLATKVERNPSFSSLNSDDVSYFKGVLGEKNVVQDEDRLETANIDWMH KYKGSSKLLLLPRNTEEVSKILEYCNSRRLAVVPQGGNTGLVGGSVPVFDEVIINAGSMNKIIAFDKVSGILVCEAGCILENLISYLDNQGFIMPLDLGA KGSCQIGGNVSTNAGGLRFVRYGSLHGNVLGLEAVLANGDVLDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSILTPPKLSSVNIAFLACEDYLSCQK LLSEAKRKLGEILSAFEFLDSHAMDLVLNHLEGVRNPLPSAVHNFYVLIETTGSDESYDKEKLEAFLLHSMESGLISDGVLAQDINQASSFWRIREGVPE ALMRAGPVYKYDLSIPVEKMYSLVEDMRLRLGQSANVVGYGHLGDGNLHLNISAPRYDDTILAQIEPYVYEWTSKHRGSISAEHGLGLMKANEIFYSKSH ETVQLMASIKKLLDPNGILNPYKVLPHSLCSYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Potri.007G018600 [exp]	0	1
AT1G01770			unknown protein		Potri.002G157400 [exp]	1.00	0.7386
AT2G27310			F-box family protein (.1)		Potri.005G208200 [exp]	3.00	0.7221
AT3G61700			Plant protein 1589 of unknown ...		Potri.015G019500 [exp]	3.74	0.6808
					Potri.008G045532 [exp]	9.21	0.7067
AT3G62970			zinc finger (C3HC4-type RING f...		Potri.014G134400 [exp]	9.69	0.7233
AT5G19930			Protein of unknown function DU...		Potri.018G073000 [exp]	10.77	0.7182
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Potri.010G146400 [exp]	12.00	0.6981
AT4G10800			unknown protein		Potri.003G144700 [exp]	26.00	0.6015
AT5G34930			arogenate dehydrogenase (.1)		Potri.008G074500 [exp]	34.33	0.6446
AT3G21280		UBP7	ubiquitin-specific protease 7 ...		Potri.001G197400 [exp]	40.12	0.5410	UBP6.2

Compare expression of checked genes

Potri.007G018600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.