Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51000 453 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) AT4G02340 326 / 2e-111 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 314 / 2e-106 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 294 / 3e-98 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 279 / 5e-93 ATSEH soluble epoxide hydrolase (.1) AT4G15955 270 / 9e-90 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G26750 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) AT5G53050 57 / 5e-09 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT4G33180 52 / 2e-07 alpha/beta-Hydrolases superfamily protein (.1) AT4G12830 52 / 2e-07 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G013500 [exp] 337 / 8e-116 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 328 / 4e-112 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 324 / 2e-110 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 318 / 4e-108 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 311 / 1e-105 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 308 / 2e-104 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 300 / 1e-100 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134800 [exp] 226 / 4e-72 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134900 [exp] 225 / 7e-72 AT4G02340 209 / 8e-66 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028340 [exp] 501 / 3e-180 AT3G51000 422 / 6e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10041790 [exp] 446 / 6e-159 AT3G51000 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) Lus10010293 [exp] 321 / 2e-109 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10029878 [exp] 311 / 3e-105 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 306 / 3e-103 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10038649 [exp] 300 / 4e-101 AT4G15960 420 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 292 / 6e-98 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 291 / 8e-98 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10006827 [exp] 288 / 4e-96 AT4G02340 380 / 8e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 282 / 6e-94 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.007G018900.1 pacid=42766086 polypeptide=Potri.007G018900.1.p locus=Potri.007G018900 ID=Potri.007G018900.1.v4.1 annot-version=v4.1 ATGGATTTGGGAGAGGTTAATCACCAAAGGATAAAAACAAATGGTATATGGTTGCATGTAGTAGAGAAAGGGTCAGGACCCCTAGTGCTTCTGCTTCATG GGTTCCCAGAATTCTGGTATTCATGGCGTCACCAGATCACTTTCTTGGCCAACCATGGATACCATGCAGTTGCTCCTGATCTGAGAGGCTATGGTGACTC TGACTCTCCTCTCAGCCCCAACTCCTACTCTGTCTTGCATCTTGCTGGTGATCTAGTAGGCCTTCTTGACTATTTTGGTGAACAACAGGCTTTTGTGGTT GGACATGACTGGGGAGCTGTTATTGGTTGGCATCTAAGCCTATTCAGGCCTGACAGACTCAAGGGACTAATAGCCATTTCTGTCCCATACTTTCCAAGAG ATCCTGTTGCTAAGCCTATCGAATTTTTTACAGGAAATTTTGGAGATGAGTTTTACATTTCTCAATTCCAGGAACCAGGAAGAGCAGAAAGGGCTTTCGC AAGATATGATTACTTGACAGTAATGAAGAAGTTTTTGATGATAAATAAGACTGATCCGTTGATAGCTCCTTCGGGCATGGAGATCATTGATTACTTGCAA ATACCTGCAGTGTTGCCACCATGGATTACTGAGGAGGAACTGCAGGTCTATGCAGACAAGTTCGAAGAATCTGGCTTCACTGGTCCTCTCAACTACTACC GTGCTATGGACCTGAACTGGGAGCTTTCTGCACCTTGGCAAGGAGCAAAGGTTACTGTTCCTACAAAGTACATCGTTGGTGACAAAGAGATAGGTTTTGA CACTTATGGTACAAGGGAATATGTGCAAGGAGACACTTTCAAAGGCTTGGTGCCTGACCTTGAAGTTGTTATTTTAGAGGGCGGCCACCATTTTATCCAC GAAGAGAGAGCCCATGAAGTCTCTCAAGAAATTCTTACCTTCCTTCAAAAGCTTTCTGTGGATTAG
AA sequence Show only first row Show all	>Potri.007G018900.1 pacid=42766086 polypeptide=Potri.007G018900.1.p locus=Potri.007G018900 ID=Potri.007G018900.1.v4.1 annot-version=v4.1 MDLGEVNHQRIKTNGIWLHVVEKGSGPLVLLLHGFPEFWYSWRHQITFLANHGYHAVAPDLRGYGDSDSPLSPNSYSVLHLAGDLVGLLDYFGEQQAFVV GHDWGAVIGWHLSLFRPDRLKGLIAISVPYFPRDPVAKPIEFFTGNFGDEFYISQFQEPGRAERAFARYDYLTVMKKFLMINKTDPLIAPSGMEIIDYLQ IPAVLPPWITEEELQVYADKFEESGFTGPLNYYRAMDLNWELSAPWQGAKVTVPTKYIVGDKEIGFDTYGTREYVQGDTFKGLVPDLEVVILEGGHHFIH EERAHEVSQEILTFLQKLSVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51000			alpha/beta-Hydrolases superfam...		Potri.007G018900 [exp]	0	1
AT1G34300			lectin protein kinase family p...		Potri.010G103300 [exp]	1.73	0.9290
AT4G24160			alpha/beta-Hydrolases superfam...		Potri.002G027300 [exp]	2.82	0.9014
AT2G30140			UDP-Glycosyltransferase superf...		Potri.001G282100 [exp]	3.00	0.8992
AT2G38340	AP2_ERF	DREB2E, DREB19	dehydration response element-b...		Potri.016G126100 [exp]	4.00	0.9088	Pt-DREB2.6
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Potri.016G038900 [exp]	5.09	0.9133
AT3G02910			AIG2-like (avirulence induced ...		Potri.019G041100 [exp]	5.29	0.9053
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G101500 [exp]	7.74	0.8991
AT1G64950		CYP89A5	"cytochrome P450, family 89, s...		Potri.007G088154 [exp]	7.93	0.9117
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Potri.018G079300 [exp]	9.48	0.9070
AT2G02370			SNARE associated Golgi protein...		Potri.001G078700 [exp]	9.74	0.8834

Compare expression of checked genes

Potri.007G018900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.