Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66380 463 / 8e-166 ATFOLT1 folate transporter 1 (.1) AT2G47490 159 / 3e-46 ATNDT1 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) AT1G25380 150 / 2e-42 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) AT2G39970 121 / 7e-32 PXN, PMP38, APEM3 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) AT4G01100 117 / 3e-30 ADNT1 adenine nucleotide transporter 1 (.1.2) AT4G32400 117 / 6e-30 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT2G33820 114 / 2e-29 ATMBAC1 Mitochondrial substrate carrier family protein (.1) AT5G46800 103 / 1e-25 BOU A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) AT5G48970 104 / 2e-25 Mitochondrial substrate carrier family protein (.1) AT5G07320 102 / 2e-24 APC3 ATP/phosphate carrier 3, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G200900 [exp] 163 / 7e-48 AT2G47490 471 / 1e-168 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.010G121500 [exp] 164 / 1e-47 AT1G25380 395 / 2e-137 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.008G123700 [exp] 163 / 1e-47 AT1G25380 417 / 8e-146 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.014G125600 [exp] 154 / 3e-44 AT2G47490 448 / 1e-159 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.010G192600 [exp] 125 / 2e-33 AT2G39970 460 / 7e-164 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.002G168100 [exp] 122 / 3e-32 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G000200 [exp] 121 / 1e-31 AT2G39970 389 / 3e-135 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.001G094100 [exp] 119 / 4e-31 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 119 / 6e-31 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028339 [exp] 369 / 4e-129 AT5G66380 384 / 2e-135 folate transporter 1 (.1) Lus10034104 [exp] 165 / 1e-48 AT1G25380 414 / 3e-145 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10001463 [exp] 156 / 2e-45 AT2G47490 415 / 1e-146 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Lus10041789 [exp] 146 / 1e-42 AT5G66380 111 / 2e-29 folate transporter 1 (.1) Lus10014839 [exp] 136 / 2e-37 AT2G39970 481 / 5e-172 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Lus10009886 [exp] 135 / 3e-37 AT2G39970 484 / 2e-173 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Lus10003041 [exp] 125 / 1e-34 AT1G25380 299 / 6e-102 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10033948 [exp] 119 / 1e-30 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032365 [exp] 117 / 3e-30 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 116 / 7e-30 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.007G019000.1 pacid=42766803 polypeptide=Potri.007G019000.1.p locus=Potri.007G019000 ID=Potri.007G019000.1.v4.1 annot-version=v4.1 ATGTCAGACTCAAAATGGCAATGGGAAAATGCCACAGCCGGTGCCGTCGCAGGCTTCGCCACAGTCGCCGCCGTGCACCCTCTTGATGTCGTACGTACTA GATTTCAAGTTGACGATGGTCGTGTCGTCAATCTCCCAACTTACAAGAACACTGCACATGCTATTTTAAACATTGCTCGCTTAGAGGGATTAAAAGGGCT TTATGCAGGCTTCTTTCCTGCAGTTCTTGGCTCAACTGTTTCCTGGGGTTTGTATTTTTTCTTTTATAGTAGAGCCAAACAAAGGTATTCTAAAAACAGG GATGAGAAGCTGAGCCCTGGTCTTCATCTTGCATCTGCTGCAGAAGCTGGAGCTTTGGTTTGCTTTTGTACAAATCCTATCTGGCTTGTAAAGACAAGAT TGCAGCTTCAGAATCCTCTTCACCAAACTCGGAGATATTCTGGGTTTTATGATGCCTTGAAAACAATTATGAGAGAGGAAGGATGGAGAGCACTGTATAA AGGAATTGTTCCCAGTCTTTTTCTGCAGGTTTCTCATGGTGCTGTCCAGTTCACAGCTTATGAGGAACTTCGTAAAGTTATTGTTGACTATAAAGCCAAA CAAAGAAAAGAAGATTGTAAAAGTGCTGATACTGATCTGTTGAATTCAGTTGATTACGCTGTCCTTGGGGGTTCTTCTAAAATCGCTGCCATTATTCTGA CATATCCATTTCAGGTTATTCGGTCCCGACTACAGCAACGGCCCAGTATGGAAGGAATTCCAAGATATATGGATAGTTGGCATGTCATGAAGGCAACTGC TCGGTTTGAAGGTTTCCGAGGTTTTTACAAGGGCATAACACCTAACCTTCTGAAAAACGTTCCTGCTTCTTCGATAACATTTATTGTCTATGAAAACGTC CTGAAGTTGCTAAAACTGGGAAGAACAAGCGACTGA
AA sequence Show only first row Show all	>Potri.007G019000.1 pacid=42766803 polypeptide=Potri.007G019000.1.p locus=Potri.007G019000 ID=Potri.007G019000.1.v4.1 annot-version=v4.1 MSDSKWQWENATAGAVAGFATVAAVHPLDVVRTRFQVDDGRVVNLPTYKNTAHAILNIARLEGLKGLYAGFFPAVLGSTVSWGLYFFFYSRAKQRYSKNR DEKLSPGLHLASAAEAGALVCFCTNPIWLVKTRLQLQNPLHQTRRYSGFYDALKTIMREEGWRALYKGIVPSLFLQVSHGAVQFTAYEELRKVIVDYKAK QRKEDCKSADTDLLNSVDYAVLGGSSKIAAIILTYPFQVIRSRLQQRPSMEGIPRYMDSWHVMKATARFEGFRGFYKGITPNLLKNVPASSITFIVYENV LKLLKLGRTSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66380		ATFOLT1	folate transporter 1 (.1)		Potri.007G019000 [exp]	0	1
AT3G44370			Membrane insertion protein, Ox...		Potri.009G121800 [exp]	6.16	0.7113
AT5G63460			SAP domain-containing protein ...		Potri.015G094600 [exp]	18.86	0.6466
AT1G14130			2-oxoglutarate (2OG) and Fe(II...		Potri.011G146600 [exp]	19.97	0.6521	ARRO.1
AT1G43190		PTB3	polypyrimidine tract-binding p...		Potri.002G066000 [exp]	34.42	0.5424
					Potri.018G126300 [exp]	36.53	0.6452
					Potri.017G139650 [exp]	39.15	0.6323
AT5G19330		ARIA	ARM repeat protein interacting...		Potri.010G090900 [exp]	40.47	0.5881
AT5G49210			unknown protein		Potri.001G317300 [exp]	41.66	0.5866
AT5G27860			unknown protein		Potri.005G023000 [exp]	47.59	0.6041
AT5G17440			LUC7 related protein (.1)		Potri.013G084800 [exp]	48.06	0.5934

Compare expression of checked genes

Potri.007G019000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.