Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66390 507 / 0 Peroxidase superfamily protein (.1) AT4G36430 455 / 6e-162 Peroxidase superfamily protein (.1) AT2G18150 455 / 1e-161 Peroxidase superfamily protein (.1) AT2G18140 424 / 1e-149 Peroxidase superfamily protein (.1) AT3G50990 421 / 4e-148 Peroxidase superfamily protein (.1) AT1G44970 392 / 6e-137 Peroxidase superfamily protein (.1) AT5G06720 322 / 2e-109 ATPA2 peroxidase 2 (.1) AT5G06730 308 / 2e-103 Peroxidase superfamily protein (.1) AT4G08770 306 / 6e-103 Prx37 peroxidase 37, Peroxidase superfamily protein (.1) AT2G35380 303 / 7e-102 Peroxidase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G118700 [exp] 571 / 0 AT5G66390 504 / 0.0 Peroxidase superfamily protein (.1) Potri.002G031200 [exp] 392 / 6e-137 AT1G44970 492 / 6e-176 Peroxidase superfamily protein (.1) Potri.001G145800 [exp] 322 / 1e-109 AT2G35380 458 / 6e-163 Peroxidase superfamily protein (.1.2) Potri.014G143200 [exp] 311 / 2e-105 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 310 / 8e-105 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.008G103200 [exp] 310 / 1e-104 AT4G16270 438 / 1e-154 Peroxidase superfamily protein (.1) Potri.003G214700 [exp] 309 / 3e-104 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.003G214800 [exp] 308 / 6e-104 AT5G06720 451 / 5e-160 peroxidase 2 (.1) Potri.013G156400 [exp] 308 / 2e-103 AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041784 [exp] 525 / 0 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10010634 [exp] 386 / 2e-134 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10028337 [exp] 368 / 1e-123 AT2G18150 354 / 7e-118 Peroxidase superfamily protein (.1) Lus10034207 [exp] 319 / 2e-108 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10004163 [exp] 302 / 1e-101 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10006534 [exp] 301 / 2e-101 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10025255 [exp] 298 / 4e-100 AT5G05340 337 / 2e-115 Peroxidase superfamily protein (.1) Lus10032786 [exp] 294 / 1e-98 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10029065 [exp] 295 / 3e-98 AT5G05340 338 / 2e-115 Peroxidase superfamily protein (.1) Lus10003573 [exp] 292 / 4e-98 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.007G019300.1 pacid=42766005 polypeptide=Potri.007G019300.1.p locus=Potri.007G019300 ID=Potri.007G019300.1.v4.1 annot-version=v4.1 ATGGCTCAGTCTATTAGCATTGTCTTAGTTCTTGCTCTTGCTCTCCTTGCCTTTGCCCCTCTTTGCTTTTGTGGCAAGACAAGTGGTGGCTACCTCTACC CACAGTTTTACGATAGGTCATGCCCGAAAGCTCAAGAAATAGTAAACTCCATTGTAGCCAAGGCAGTTGCTAAAGAAGCTCGCATGGCAGCCTCATTACT TAGGCTCCATTTTCATGACTGTTTTGTCAAGGGCTGCGATGCATCAATATTGCTAGACAGCAGTGGAAGCATAATAACTGAGAAGAGTTCAAATCCAAAC AGAAACTCAGTTCGAGGATTTGAAGTGATCGACGAGATTAAATCTGCACTAGAAAAGGAGTGTCCTAAAACTGTTTCCTGTGCTGATATCATGGCTTTGG CTGCAAGAGATTCTACTGTTATTGCTGGAGGTCCTAGCTGGGAAGTTCCATTGGGAAGAAGGGACTCTAGAGGTGCAAGTTTGAGTGGTTCTAACAACAA TATTCCTGCTCCAAACAACACATTTCAAACAATTCTTACCAAGTTCAAGTTACAAGGCCTTGATGTTGTTGATCTTGTAGCACTATCTGGGAGCCACACA ATTGGAAATGCTCGGTGCACCAGCTTCAGGCAGAGGCTGTACAACCAGTCAGGAAATGGGCAGCCTGATTCCACTCTTCAACAATCATTTGCTGCCCAGT TGCGCACTAGGTGCCCCAGATCAGGAGGTGACCAGAACCTGTTTTTCTTGGACTTTGTAAGTCCAAGAAAGTTCGACAACAGCTACTTCAACAACATATT GGCTTCAAAGGGACTGCTGAGCTCTGACCAAGTTCTCCTGACAAAGAATGAAGCATCGATGGAATTGGTCAAGAAATATGCCGAGAACAATGAGCTTTTC TTTGAGCAATTTGCCAAGTCCATGGTTAAGATGGGAAATATCTCTCCGTTGACAGGTTCCAGGGGAGAGATTAGAAAGAGTTGCAGGAAGATTAATGCTT GA
AA sequence Show only first row Show all	>Potri.007G019300.1 pacid=42766005 polypeptide=Potri.007G019300.1.p locus=Potri.007G019300 ID=Potri.007G019300.1.v4.1 annot-version=v4.1 MAQSISIVLVLALALLAFAPLCFCGKTSGGYLYPQFYDRSCPKAQEIVNSIVAKAVAKEARMAASLLRLHFHDCFVKGCDASILLDSSGSIITEKSSNPN RNSVRGFEVIDEIKSALEKECPKTVSCADIMALAARDSTVIAGGPSWEVPLGRRDSRGASLSGSNNNIPAPNNTFQTILTKFKLQGLDVVDLVALSGSHT IGNARCTSFRQRLYNQSGNGQPDSTLQQSFAAQLRTRCPRSGGDQNLFFLDFVSPRKFDNSYFNNILASKGLLSSDQVLLTKNEASMELVKKYAENNELF FEQFAKSMVKMGNISPLTGSRGEIRKSCRKINA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66390			Peroxidase superfamily protein...		Potri.007G019300 [exp]	0	1
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.012G007700 [exp]	2.44	0.9563
					Potri.012G028432 [exp]	2.44	0.9581
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Potri.008G023800 [exp]	3.31	0.8715
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Potri.015G110400 [exp]	4.00	0.8989
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Potri.010G044500 [exp]	4.00	0.9428
AT2G46570		LAC6	laccase 6 (.1)		Potri.014G100600 [exp]	4.47	0.9420
					Potri.019G089200 [exp]	5.56	0.7540
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Potri.012G027800 [exp]	6.00	0.9342
AT1G04360			RING/U-box superfamily protein...		Potri.008G165900 [exp]	8.24	0.8291
AT4G18380			F-box family protein (.1.2)		Potri.003G203500 [exp]	8.48	0.8923

Compare expression of checked genes

Potri.007G019300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.