Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36440 491 / 1e-173 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041785 [exp] 359 / 9e-123 AT4G36440 336 / 4e-114 unknown protein Lus10028337 [exp] 360 / 4e-119 AT2G18150 354 / 7e-118 Peroxidase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G019400.2 pacid=42766247 polypeptide=Potri.007G019400.2.p locus=Potri.007G019400 ID=Potri.007G019400.2.v4.1 annot-version=v4.1 ATGATGCAGAGTCAACGACACCCTTTTGTAGAATCTTTACCCTGTTCATGCATAATAATAATAGTAACTGCTGTCGTAACACAAGTGCTTGTTGGCGTTG CATCGGTTGCTGTTCCGAGCTCTAACTGTTACGCTCTCGATAATTCTAGTCGAATTGTTGATTTTAGCAGTTGGATTGGGCATTTTTTTGAGTATGAAGG GAAGGAAACGGACGTAGTGATTCGGTTTTGCAAAGACGTGGAGGCTAGATCCCAAACGGGATATGTGGACTTTGGCCGATTTAATAATTTCAACCACTTT GTTGCTGGCTCAGGACGTGTTGATTTTGTTCAAGGGTATTACAATGGTGACTTGCTGAATTGTGAGCAAAGTTATGACAAACTGGGACGTACAGCTCAGG TGAATATTATATGTGGAAGTTGTTTAAATGGACAGTGTAAAGGTGAACTTGGATGCATATGCAATGTTACTCAGGAGTCAAGTTGCAGAATTTTTGTTGA ACTTGCAATTCCATGCGAGAAACCTGGTCCTCGGGTATTTGAAGGCTTCACCGTTGGATTTCATCCACGATCATGGGAAATTGTTTACAATGGATTGACT CAACTAGGCTATGAAAAGTCTCACCATGATTTTAGCTTCACAACTGAACAAACTCAAGTAACCCTTTATATGACTGCAATTGCTTCCCTTTCCACTTTGG TGCGGAAGCCTATGATTAAGATTCTTCCAGAGAAAGGCCTGGAGGTGAGGTTGTCAGGTTCAGGGGCGACTGGAAGTCCTCCTACAACCTTGACACCTAC ATTGTTAAATGTTGAATGGACATGTCAGGAGGCTCGTGATACTCCATATGAAGTTAATGTCACAATACCAATAGAGGGTTATGAGCCCATTCAGTTTTTC CTTGCCAAAAGTTGTGAACATAGGCAGGATCAAAGAGAAGACTCTACAAGAGGATGGGCTATCTTTGGAATCATATCTTGCATATTCATTGTTGCATCAA CTCTGTTTTGTGTTGGAGGGTTCATTTACAAAACCCGGGTGGAACGCCTGCATGGGATCGATGCTTTGCCAGGCATGACATATTTGTCTGCGTGTTTAGA AACTGCAAGTGGAGTAGGCTATGGCTATTCACGACCAGAAGAGAATGGCAGTGGCTATGCTAGTGAAGCTTCCTGGGAACGGCCATCAGCTTCAGCTCAG GGAACAAAGAAGCAAAGTACACGAAACTACGGTTCCATTTAA
AA sequence Show only first row Show all	>Potri.007G019400.2 pacid=42766247 polypeptide=Potri.007G019400.2.p locus=Potri.007G019400 ID=Potri.007G019400.2.v4.1 annot-version=v4.1 MMQSQRHPFVESLPCSCIIIIVTAVVTQVLVGVASVAVPSSNCYALDNSSRIVDFSSWIGHFFEYEGKETDVVIRFCKDVEARSQTGYVDFGRFNNFNHF VAGSGRVDFVQGYYNGDLLNCEQSYDKLGRTAQVNIICGSCLNGQCKGELGCICNVTQESSCRIFVELAIPCEKPGPRVFEGFTVGFHPRSWEIVYNGLT QLGYEKSHHDFSFTTEQTQVTLYMTAIASLSTLVRKPMIKILPEKGLEVRLSGSGATGSPPTTLTPTLLNVEWTCQEARDTPYEVNVTIPIEGYEPIQFF LAKSCEHRQDQREDSTRGWAIFGIISCIFIVASTLFCVGGFIYKTRVERLHGIDALPGMTYLSACLETASGVGYGYSRPEENGSGYASEASWERPSASAQ GTKKQSTRNYGSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36440			unknown protein		Potri.007G019400 [exp]	0	1
AT1G78690			Phospholipid/glycerol acyltran...		Potri.011G146800 [exp]	1.73	0.8918
AT3G27930			unknown protein		Potri.001G348700 [exp]	2.82	0.9059
AT5G65960			GTP binding (.1)		Potri.002G177100 [exp]	5.09	0.9073
AT3G28430			unknown protein		Potri.006G204600 [exp]	13.85	0.8842
AT1G24764		ATMAP70-2	microtubule-associated protein...		Potri.008G135100 [exp]	14.31	0.8750
AT2G36360			Galactose oxidase/kelch repeat...		Potri.008G024700 [exp]	14.96	0.8513
AT1G22970			unknown protein		Potri.010G117100 [exp]	21.77	0.8739
AT3G15220			Protein kinase superfamily pro...		Potri.001G397600 [exp]	23.32	0.8599
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Potri.018G048600 [exp]	25.21	0.8423	Pt-GPA1.1
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Potri.001G150800 [exp]	26.15	0.8350

Compare expression of checked genes

Potri.007G019400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.