Plant FIBer expression Database

Potri.007G019733 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G26750 385 / 9e-128 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G019800
[exp]
1115 / 0 AT3G26750 388 / 5e-129 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021459
[exp]
422 / 2e-142 AT3G26750 402 / 2e-135 unknown protein
Lus10016099
[exp]
413 / 4e-139 AT3G26750 405 / 5e-137 unknown protein
Lus10016097
[exp]
76 / 4e-14 AT2G28260 689 / 0.0 cyclic nucleotide-gated channel 15 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0552 Hect PF09814 HECT_2 HECT-like Ubiquitin-conjugating enzyme (E2)-binding
Representative CDS sequence
>Potri.007G019733.1 pacid=42766445 polypeptide=Potri.007G019733.1.p locus=Potri.007G019733 ID=Potri.007G019733.1.v4.1 annot-version=v4.1
ATGTCTCTCAAAAACCCTAAAAAATGGAGATTCACATGGGAAACCCAATCCCAATCACCAAATCTAAAGCTCTTTCTCTTCAATTCACAATCAAAACCTT
CAGTTCACCACCTTCAAGCTCAATTAAACCTCTCAAAATCCCACCTTTTAGTTACCTTCACCGAGAATGAAGAAACCAGTGAAGTTTCAATTAGGGTTCC
GATTCCTAGGGTTTTAATTGACCCTGAATCTCCAGTAAATGCTAAAGCTTCTGATGATCATATTGAAGTTAAGCTTGTTTTGCTTCTTCCTGTTGATCAC
CCTTTAGTTTCTACCTTTGATTTGTTGAATTTGAGTGATGAAAGTGAGAGGAACGAGGATTTGGATCTGTTAAAGCCACTCATTATGGATTCTGATTTAA
AGAGCTTATCCTCAATGGAAGGAGTTCATTTTTATTGCAGAAGTTGCTCGAATAGACTGACTAGAAGTCCTTTAAAGCAATTTGTGGAAATGCCATCGGT
TAATTGGCCAGAGATGGCTGACAACTGGTTTGGAGGTTGCTGTTGTTCATTTGGAGGTGCCAGTGAGAAGTTGGTGAATAGGTATGCACATGCATATGCA
TGTCCAATGGGTGTGTGCATGTTGAATTCTACAGCTGTTACACTTTGCAGTGATGATCTTGCTGGATGTAAATTTTCTGAAAAATATAGAATCCAAACGT
GCAAGCCTGAACAGGAGTCTGGCGATGAAGGTTTAAGTGAAGAAGCTATGCGAGATTTTGAAACAGAATCTGGAAGAGTTACAAGGTGTGACAGTCAATG
CAGAGTGATCCATGGTGTTAATGGAAAATCAGGGTCTTCATGTTCCAAATTGGAAAACCATGGCGAGAATGTCAAATTTAAAGTTGCAGAGGAAAAAACT
AATAGTAGTATATTATTGTCTGCACTACCAGCATCAGATCTCTCTGAAAAAGTGGCTCCAGGACCAGGTTGTTGTGATTCAGTACATCATACTCAAGATT
ATACTGATGAAGGTGGCATCCATGATGTGTGTGGACCTTCTTTGGAAGACCAGAAAACCACAAAAGATATGGAACTCAGGATAAATCAGAGATCTTTCCT
CAATGGCTTTCTTGGAGATGCTTTCACTGCTAGATCCTATAATCTATCTACCGATATTGAATGGAAGCAATTTGTTTGCCCACAGTGCTCATCTCTTATT
GGTGCTTATCCATGTGCAAATGGGGACATGCCTGTAGATGATGGAGTTAGACTTTTTAAATGCTACATTTCCACTTCTCTGCCAGTTGGTGAACAAGCTG
ACCTTTTCAGGAAATATACCCTGGAGAGAATGTTCACAAGTCAGCTAGTGGAAAGTGCAAAAGATGAATTATCATTCAGGACCGTGGTCAGGGATTTGAG
AACAAAATCTCCCATGCTTCAGATTGTCCTTGTAAATCCAAATTCATGGTGCTGTAGTGGTGATTGTTTGGACACAAAGAGCAATACTGATTCAGTTTTG
AAGTTAGATCTACACCCTGTTATCAAGGTTCTGTTTTCAGATTGTAGCAGCAATACAGAATCTCAACTGAGGGTGTTGGAAGATTGGGTGACAAAAAATC
AAGCAGATGAAGTTTTCATGTTGGCGCATCTAATAAAAGAGTTGATTGAAACCATAGCATCTGCTAAAGTTGAATTTCCGCCATCATGCACTTTCCTTCA
GGGTTTATCCTTTTCGTCCATGCCAAGGTAA
AA sequence
>Potri.007G019733.1 pacid=42766445 polypeptide=Potri.007G019733.1.p locus=Potri.007G019733 ID=Potri.007G019733.1.v4.1 annot-version=v4.1
MSLKNPKKWRFTWETQSQSPNLKLFLFNSQSKPSVHHLQAQLNLSKSHLLVTFTENEETSEVSIRVPIPRVLIDPESPVNAKASDDHIEVKLVLLLPVDH
PLVSTFDLLNLSDESERNEDLDLLKPLIMDSDLKSLSSMEGVHFYCRSCSNRLTRSPLKQFVEMPSVNWPEMADNWFGGCCCSFGGASEKLVNRYAHAYA
CPMGVCMLNSTAVTLCSDDLAGCKFSEKYRIQTCKPEQESGDEGLSEEAMRDFETESGRVTRCDSQCRVIHGVNGKSGSSCSKLENHGENVKFKVAEEKT
NSSILLSALPASDLSEKVAPGPGCCDSVHHTQDYTDEGGIHDVCGPSLEDQKTTKDMELRINQRSFLNGFLGDAFTARSYNLSTDIEWKQFVCPQCSSLI
GAYPCANGDMPVDDGVRLFKCYISTSLPVGEQADLFRKYTLERMFTSQLVESAKDELSFRTVVRDLRTKSPMLQIVLVNPNSWCCSGDCLDTKSNTDSVL
KLDLHPVIKVLFSDCSSNTESQLRVLEDWVTKNQADEVFMLAHLIKELIETIASAKVEFPPSCTFLQGLSFSSMPR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G26750 unknown protein Potri.007G019733
[exp]
0 1
AT3G26750 unknown protein Potri.007G019800
[exp]
1.00 0.7963
AT3G12380 ATARP5 actin-related protein 5 (.1.2) Potri.010G202000
[exp]
6.78 0.7251 ARP909
AT2G21840 Cysteine/Histidine-rich C1 dom... Potri.019G020100
[exp]
13.22 0.7652
AT5G46940 Plant invertase/pectin methyle... Potri.005G023050
[exp]
16.06 0.7746
AT5G56420 F-box/RNI-like/FBD-like domain... Potri.016G106600
[exp]
16.15 0.7689
AT3G19650 cyclin-related (.1) Potri.009G088600
[exp]
37.74 0.6802
AT2G34400 Pentatricopeptide repeat (PPR-... Potri.003G041650
[exp]
40.17 0.6236
AT2G30000 PHF5-like protein (.1) Potri.009G072400
[exp]
71.30 0.7126
AT5G55090 MAPKKK15 mitogen-activated protein kina... Potri.003G130000
[exp]
71.88 0.7295
AT2G42160 BRIZ1 BRAP2 RING ZnF UBP domain-cont... Potri.018G128100
[exp]
92.56 0.6409

Potri.007G019733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.