Plant FIBer expression Database

Potri.007G019800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G26750 388 / 6e-129 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G019733
[exp]
1115 / 0 AT3G26750 385 / 9e-128 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021459
[exp]
420 / 2e-141 AT3G26750 402 / 2e-135 unknown protein
Lus10016099
[exp]
416 / 4e-140 AT3G26750 405 / 5e-137 unknown protein
Lus10016097
[exp]
76 / 4e-14 AT2G28260 689 / 0.0 cyclic nucleotide-gated channel 15 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0552 Hect PF09814 HECT_2 HECT-like Ubiquitin-conjugating enzyme (E2)-binding
Representative CDS sequence
>Potri.007G019800.1 pacid=42765207 polypeptide=Potri.007G019800.1.p locus=Potri.007G019800 ID=Potri.007G019800.1.v4.1 annot-version=v4.1
ATGTCTCTCAAAAACCCTAAAAAATGGAGATTCACATGGGAAACCCAATCCCAATCACCAAATCTAAAGCTCTTTCTCTTCAATTCACAATCAAAACCTT
CAGTTCACCACCTGCAAGCTCAATTAAACCTCTCAAAATCCCACCTTTTAGTTACCTTCACGGAGAATGAAGAAACCAGTGAAGTTTCAATTAGGGTTCC
GATTCCTAGGGTTTTAATTGACCCTGAATCTCCAGTAAATGCTAAAGCTTCTGATGATCATATTGAAGTTAAGCTTGTTTTGCTTCTTCCTGTTGATCAC
CATTTAGTTTCTACCTTTGATTTGTTGAATTTGAGTGATGATGAAAGTGAGAGGAACGAGGATTTGGATTTGTTAAACCCATTCATTATGGATTCTGATT
TAAAGAGCTTATCCTCAATGGAAGGAGTTCATTTTTATTGCAGAAGTTGCTCGAATAGACTGACTAGAAGTCCTTTAAAGCAATTTGTGGAAATGCCATC
GGTTAATTGGCCAGAGATGGCTGACAACTGGTTTGGAGGTTGCTGTTGTTCATTTGGAGGTGCCAGTGAGAAGTTGGTGAATAGGTATGCACATGCATAT
GCATGTCCAATGGGTGTGTGCATGTTGAATTCTACAGCTGTTACACTTTGCAGTGATGATCTTGCTGGATGTAAATTTTCTGAAAAATATAGAATCCAAA
CGTGCAAGCCTGAACAGGAGTCTGGCGATGAAGGTTTAAGTGAAGAAGCTATGCGAGATTTTGAAACAGAATCTGGAAGAGCTACAAGGTGTGACAGTCA
ATGCGGAGTGATCCATGGTGTTAATGGAAAATCAGGGTCTTCATGTTCCAAATTGGAAAACCATGGCGAGAATGTCAAATTTAAAGTTGCAGAGGAAAAA
ACTAATAGTAGTATATTATTGTCTGCACTACCAGCATCAGATCTCTCTGAAAAAGTGGCTCCAGGACCAGGTTGTTGTGATTCAGTACATCATACTCAAG
ATTATACTGATGAAGGTGGCATCCATGATGTGTGTGGACCTTCTTTGGAAGACCAGAAAACCACAAAAGATATGGAACTCAGGATAAATCAGAGATCTTT
CCTCAATGGCTTTCTTGGAGATGCTTTCACTGCTAGATCCTATAATCTATCTACCGATATTGAATGGAAGCAATTTGTTTGCCCACAGTGCTCATCTCTT
ATTGGTGCTTATCCATGTGCAAATGGGGACATGCCTGTAGATGATGGAGTTAGACTTTTTAAATGCTACATTTCCACTTCTCTGCCAGTTGGTGAACAAG
CTGACCTTTTCAGGAAATATACTCTGGAGAGAATGTTCACAAGTCAGCTAGTGGAAAGTGCAAAAGATGAATTATCATTCAGGACTGTGGTCAGGGATTT
GAGAACAAAATCTCCCATGCTTCAGATTGTCCTTGTAAATCCAAATTCATGGTGCTGTAGTGGTGATTGTTTGGACACAAAGAGCAATACAGATTCAGTT
TTGAAGTTAGATCTACACCCTGTTATCAAGGTTCTGTTTTCAGATTGTAGCAGCAATACAGAATCTGAACTGAGGGTGTTGGAAGATTGGGTGACAAAAA
ATCAAGCAGATGAAGTTTTCATGTTGGCGCATCTAATAAAAGAGTTAATTGAAACCATAGCATCTGCTAAAGTTGAATTTCCGCCATCATGCACTTTCCT
TCAGGGTTTATCCTTTTCGTCCATGCCAAGGTAA
AA sequence
>Potri.007G019800.1 pacid=42765207 polypeptide=Potri.007G019800.1.p locus=Potri.007G019800 ID=Potri.007G019800.1.v4.1 annot-version=v4.1
MSLKNPKKWRFTWETQSQSPNLKLFLFNSQSKPSVHHLQAQLNLSKSHLLVTFTENEETSEVSIRVPIPRVLIDPESPVNAKASDDHIEVKLVLLLPVDH
HLVSTFDLLNLSDDESERNEDLDLLNPFIMDSDLKSLSSMEGVHFYCRSCSNRLTRSPLKQFVEMPSVNWPEMADNWFGGCCCSFGGASEKLVNRYAHAY
ACPMGVCMLNSTAVTLCSDDLAGCKFSEKYRIQTCKPEQESGDEGLSEEAMRDFETESGRATRCDSQCGVIHGVNGKSGSSCSKLENHGENVKFKVAEEK
TNSSILLSALPASDLSEKVAPGPGCCDSVHHTQDYTDEGGIHDVCGPSLEDQKTTKDMELRINQRSFLNGFLGDAFTARSYNLSTDIEWKQFVCPQCSSL
IGAYPCANGDMPVDDGVRLFKCYISTSLPVGEQADLFRKYTLERMFTSQLVESAKDELSFRTVVRDLRTKSPMLQIVLVNPNSWCCSGDCLDTKSNTDSV
LKLDLHPVIKVLFSDCSSNTESELRVLEDWVTKNQADEVFMLAHLIKELIETIASAKVEFPPSCTFLQGLSFSSMPR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G26750 unknown protein Potri.007G019800
[exp]
0 1
AT3G26750 unknown protein Potri.007G019733
[exp]
1.00 0.7963
AT2G34400 Pentatricopeptide repeat (PPR-... Potri.003G041650
[exp]
1.41 0.7260
AT2G26200 S-adenosyl-L-methionine-depend... Potri.006G225600
[exp]
8.30 0.6753
AT1G14060 GCK domain-containing protein ... Potri.013G099100
[exp]
8.66 0.6425
AT4G12080 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localize... Potri.002G148600
[exp]
8.77 0.6253
AT2G24170 Endomembrane protein 70 protei... Potri.006G184200
[exp]
12.80 0.4996
AT3G61250 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb d... Potri.015G143500
[exp]
16.12 0.6473
Potri.018G047150
[exp]
20.00 0.5994
AT2G34400 Pentatricopeptide repeat (PPR-... Potri.003G041501
[exp]
23.66 0.5521
AT2G15320 Leucine-rich repeat (LRR) fami... Potri.009G097100
[exp]
35.51 0.5698

Potri.007G019800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.