Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18905 563 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G18900 491 / 1e-171 Transducin/WD40 repeat-like superfamily protein (.1) AT4G35370 453 / 4e-157 Transducin/WD40 repeat-like superfamily protein (.1) AT2G32950 71 / 6e-13 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT4G11110 71 / 1e-12 SPA2 SPA1-related 2 (.1) AT2G46340 69 / 4e-12 SPA1 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) AT5G56130 67 / 6e-12 THO3, AtTEX1 Transducin/WD40 repeat-like superfamily protein (.1) AT4G35050 66 / 3e-11 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT1G29260 64 / 4e-11 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT4G28450 64 / 8e-11 nucleotide binding;protein binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G019601 [exp] 864 / 0 AT4G18905 566 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.017G014700 [exp] 70 / 1e-12 AT4G28450 798 / 0.0 nucleotide binding;protein binding (.1) Potri.003G137100 [exp] 70 / 2e-12 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.001G094500 [exp] 70 / 2e-12 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.004G002700 [exp] 67 / 1e-11 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G137300 [exp] 66 / 2e-11 AT4G28450 794 / 0.0 nucleotide binding;protein binding (.1) Potri.002G216200 [exp] 66 / 2e-11 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G470900 [exp] 64 / 3e-11 AT5G56130 586 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G021700 [exp] 65 / 5e-11 AT2G32950 686 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015348 [exp] 593 / 0 AT4G18905 527 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10001126 [exp] 469 / 9e-159 AT4G18905 427 / 5e-142 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10004613 [exp] 410 / 9e-141 AT4G35370 384 / 1e-130 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004536 [exp] 204 / 4e-63 AT4G18905 194 / 2e-60 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10008356 [exp] 69 / 1e-12 AT5G56130 583 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10007274 [exp] 69 / 2e-12 AT1G29260 529 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10029221 [exp] 68 / 5e-12 AT1G29260 531 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10029990 [exp] 68 / 7e-12 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10035332 [exp] 68 / 8e-12 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10037378 [exp] 67 / 2e-11 AT4G28450 733 / 0.0 nucleotide binding;protein binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.007G019833.1 pacid=42765641 polypeptide=Potri.007G019833.1.p locus=Potri.007G019833 ID=Potri.007G019833.1.v4.1 annot-version=v4.1 ATGATAGCAGCAGTTTCGTGGGTACCCAAAGGGGTTGCAAAGTCTGTACCAAGTGTAGCAGACCCACCTTCAAAAGAGGAAATTGAAGAGCTGATCAAAG CTAGTGATTTAGAGAGAAGTGGAGAAGATAGTGGCAGCGAGGAAGATGACCAGGAAATGGATGTTGATGCTGCCAAGCAGACCGGTGAAGTAAGCCAAGC ATTAGCTGTAGCAAATGCACTTGGCAGAAGTTCCAAAGTTAACAAGTCAGAGACCAAATTTGATGACATAGCAGATGGTCTGCAGGAACTTGATATGGAC AAATATGATGATGAGGAGGATGGTATTGAGCTGTTCAGCACAGGACTCGGGGACCTTTACTACCCAAGTAATAGCATGGACCCGTACATCAAGGATGGAG ATGATGATGATTCTGAAGATCTTGAAGACATGGCTATCAAACCAAAGGATGCAGTCATTGTTTGTGCATGCAACAAGGATGAATTTAGTAACCTCGAGGT TTGGATATTGGATGAAACAAGTGATGGTGATTCAAACATATACGTTCACCATGAGGTTCCCCTTTCAGCATTTCCCCTTTGCACAGCATGGCTTGATTGT CCACTTAAAGGGGGAGAAAAAGGGAATTTTATAGCTGTTGGGTCAATGGAACCTGCCATTGAAATATGGGACCTTGACATTATTGATGAAGTGCAACCAG CTGTGGTATTAGGTGGCATTGAAGAGAAAAAGAAGAAAAAAGGGAAAAAGGTGTCAATTAAATACAAAGAAGGCAGTCACACTGATTCTGTCCTTGGTCT TGCTTGGAACAAGCATTTCAGGAACATCCTTGCCAGTGCTAGTGCCGACAAACAAGTCAAAATTTGGGATGTGGATGCTGGAAAATGTGACATTACCATG GAGCATCATACAGACAAGGTTCAAGCAGTTGCATGGAATCATCATGAGCCACAAGTTCTTCTCAGTGGATCCTTTGATCGTTCAGTAGTCATGAAGGATG GAAGGTTGCCTTCAGATCCTGGTTTCAAGTGGTCGGTCACAGCTGACGTTGAAAGCTTGGCCTGGGATCCGCATGATAAGCATTTATTTGTGGTGAGTCT TGAAGATGGTACAGTTCAAGGTTTTGACATCCGTGCTGCCAAGTCTGGATCATCTTCTGACCTTAAGCCAAGTTTTACCCTCCATGCACATGACAAAGCT GTTTGCACAATCTCTTATAATCCTTTAGCACCTAATCTTCTTGCTACTGGATCAACAGATAAAATGGTAAAACTCTGGGATCTGTCCAACAACCAACCCT CATGTTTAGTATCCAAGAATCCTAAAGCAGGAGCTATCTTTTCTGTTTCCTTCTCAGAGGACAACCCTTTTCTGCTCGCTATTGGAGGCTCCAAGGGGAC ATTGGAACTATGGGATACATTGTCTGAGGCCGAGGTTGCTAGAAGATTTGGAACCACAGCAAGCTGA
AA sequence Show only first row Show all	>Potri.007G019833.1 pacid=42765641 polypeptide=Potri.007G019833.1.p locus=Potri.007G019833 ID=Potri.007G019833.1.v4.1 annot-version=v4.1 MIAAVSWVPKGVAKSVPSVADPPSKEEIEELIKASDLERSGEDSGSEEDDQEMDVDAAKQTGEVSQALAVANALGRSSKVNKSETKFDDIADGLQELDMD KYDDEEDGIELFSTGLGDLYYPSNSMDPYIKDGDDDDSEDLEDMAIKPKDAVIVCACNKDEFSNLEVWILDETSDGDSNIYVHHEVPLSAFPLCTAWLDC PLKGGEKGNFIAVGSMEPAIEIWDLDIIDEVQPAVVLGGIEEKKKKKGKKVSIKYKEGSHTDSVLGLAWNKHFRNILASASADKQVKIWDVDAGKCDITM EHHTDKVQAVAWNHHEPQVLLSGSFDRSVVMKDGRLPSDPGFKWSVTADVESLAWDPHDKHLFVVSLEDGTVQGFDIRAAKSGSSSDLKPSFTLHAHDKA VCTISYNPLAPNLLATGSTDKMVKLWDLSNNQPSCLVSKNPKAGAIFSVSFSEDNPFLLAIGGSKGTLELWDTLSEAEVARRFGTTAS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18905			Transducin/WD40 repeat-like su...		Potri.007G019833 [exp]	0	1
AT5G67610			Uncharacterized conserved prot...		Potri.007G005500 [exp]	2.00	0.8091
AT2G16650		PRORP2	proteinaceous RNase P 2 (.1)		Potri.009G145200 [exp]	2.44	0.8092
AT2G16650		PRORP2	proteinaceous RNase P 2 (.1)		Potri.004G185200 [exp]	4.58	0.8146
AT5G25800			Polynucleotidyl transferase, r...		Potri.005G186600 [exp]	15.29	0.7626
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Potri.005G201400 [exp]	21.93	0.7514
AT5G09380			RNA polymerase III RPC4 (.1)		Potri.006G143500 [exp]	35.59	0.7702
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Potri.009G099300 [exp]	35.69	0.7109
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121851 [exp]	45.29	0.7367
AT3G12340			FKBP-like peptidyl-prolyl cis-...		Potri.007G000500 [exp]	45.72	0.7411
AT5G19300			unknown protein		Potri.010G091400 [exp]	52.38	0.7467

Compare expression of checked genes

Potri.007G019833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.