Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75390 130 / 6e-39 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) AT4G34590 127 / 5e-38 bZIP ATB2, ATBZIP11, BZIP11, GBF6 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) AT2G18160 125 / 3e-37 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) AT3G62420 93 / 2e-24 bZIP ATBZIP53 basic region/leucine zipper motif 53 (.1) AT2G04038 73 / 1e-16 bZIP ATBZIP48 basic leucine-zipper 48 (.1) AT1G13600 69 / 5e-15 bZIP ATBZIP58 basic leucine-zipper 58 (.1) AT5G15830 67 / 4e-14 bZIP ATBZIP3 basic leucine-zipper 3 (.1) AT3G30530 65 / 1e-13 bZIP ATBZIP42 basic leucine-zipper 42 (.1) AT5G38800 62 / 1e-12 bZIP ATBZIP43 basic leucine-zipper 43 (.1) AT5G49450 61 / 3e-12 bZIP ATBZIP1 basic leucine-zipper 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G119300 [exp] 233 / 1e-79 AT2G18160 130 / 3e-39 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) Potri.005G231300 [exp] 157 / 7e-50 AT1G75390 172 / 2e-55 basic leucine-zipper 44 (.1.2) Potri.004G158200 [exp] 154 / 2e-48 AT1G75390 152 / 8e-48 basic leucine-zipper 44 (.1.2) Potri.009G119700 [exp] 148 / 4e-46 AT4G34590 154 / 9e-49 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) Potri.002G031900 [exp] 145 / 6e-45 AT1G75390 128 / 3e-38 basic leucine-zipper 44 (.1.2) Potri.014G120800 [exp] 99 / 4e-27 AT3G62420 161 / 8e-52 basic region/leucine zipper motif 53 (.1) Potri.002G196200 [exp] 95 / 2e-25 AT3G62420 182 / 3e-60 basic region/leucine zipper motif 53 (.1) Potri.007G006900 [exp] 72 / 5e-16 AT2G22850 118 / 1e-32 basic leucine-zipper 6 (.1.2) Potri.004G111100 [exp] 71 / 2e-15 AT3G30530 156 / 9e-49 basic leucine-zipper 42 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041780 [exp] 149 / 3e-46 AT1G75390 135 / 2e-40 basic leucine-zipper 44 (.1.2) Lus10028333 [exp] 148 / 1e-45 AT1G75390 134 / 5e-40 basic leucine-zipper 44 (.1.2) Lus10024279 [exp] 141 / 3e-43 AT1G75390 166 / 6e-53 basic leucine-zipper 44 (.1.2) Lus10001347 [exp] 140 / 5e-43 AT1G75390 159 / 4e-50 basic leucine-zipper 44 (.1.2) Lus10040428 [exp] 114 / 3e-32 AT1G75390 148 / 8e-46 basic leucine-zipper 44 (.1.2) Lus10010005 [exp] 110 / 4e-31 AT3G62420 164 / 1e-52 basic region/leucine zipper motif 53 (.1) Lus10025024 [exp] 107 / 7e-30 AT3G62420 161 / 9e-52 basic region/leucine zipper motif 53 (.1) Lus10016884 [exp] 71 / 3e-16 AT5G49450 80 / 8e-20 basic leucine-zipper 1 (.1) Lus10011722 [exp] 72 / 1e-15 AT3G49760 120 / 2e-34 basic leucine-zipper 5 (.1) Lus10013059 [exp] 71 / 2e-15 AT3G30530 147 / 8e-45 basic leucine-zipper 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Potri.007G019900.1 pacid=42766099 polypeptide=Potri.007G019900.1.p locus=Potri.007G019900 ID=Potri.007G019900.1.v4.1 annot-version=v4.1 ATGGCCTCTTCTAGTGGGGCATCTTCAGGGTCAACAACCATGTTGAGGAACTCAAGTTCTGAAGAGGATCTGCAGCAAGTTATGGACCTAAGGAAGCGTA AGAGGATGCTGTCTAATAGAGAATCTGCAAGAAGATCCAGAGTGAAGAAACAGAAACACCTGGATGATCTCATGGGACAGCTTGGTCAACTCAGCAAAGA AAATAACGAGATTCTGAAAAGGATGAATGTTACCTCTCAGCTTTACATGAATATCGAAGCTGAGAACTCTATCCTCAGAGCCCAAATGGCTGAGCTGAGC CACAGATTGAATTCTCTCAATGAAATCATTGAATACGTCCACTTTTGCAGTGGCACTTTTGAACGTCGTGAGGATGCTGCTGCCCCCACTACTGGTGCTT TTGGTCATCAGCTCGGTGATGATTTTTTCATGAATCCGTGGAATAATGCTGATTTCCATTTGAATCAACCTATCATGGACATGATCATGTACTAA
AA sequence Show only first row Show all	>Potri.007G019900.1 pacid=42766099 polypeptide=Potri.007G019900.1.p locus=Potri.007G019900 ID=Potri.007G019900.1.v4.1 annot-version=v4.1 MASSSGASSGSTTMLRNSSSEEDLQQVMDLRKRKRMLSNRESARRSRVKKQKHLDDLMGQLGQLSKENNEILKRMNVTSQLYMNIEAENSILRAQMAELS HRLNSLNEIIEYVHFCSGTFERREDAAAPTTGAFGHQLGDDFFMNPWNNADFHLNQPIMDMIMY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Potri.007G019900 [exp]	0	1
AT5G44440			FAD-binding Berberine family p...		Potri.001G461800 [exp]	3.00	0.8767
					Potri.007G082600 [exp]	16.00	0.8752
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447500 [exp]	24.55	0.8690
AT1G72490			unknown protein		Potri.006G140100 [exp]	28.72	0.8487
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447300 [exp]	37.68	0.8659
AT3G46280			protein kinase-related (.1)		Potri.013G030866 [exp]	50.46	0.8531
AT3G45650		NAXT1	nitrate excretion transporter1...		Potri.008G045100 [exp]	50.49	0.8375
AT2G19210			Leucine-rich repeat transmembr...		Potri.013G030800 [exp]	58.47	0.8501
AT3G09220		LAC7	laccase 7 (.1)		Potri.006G094100 [exp]	71.29	0.8437	LAC110a
AT1G06840			Leucine-rich repeat protein ki...		Potri.019G131800 [exp]	72.13	0.8288

Compare expression of checked genes

Potri.007G019900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.