Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18170 654 / 0 ATMPK7 MAP kinase 7 (.1) AT1G10210 622 / 0 ATMPK1 mitogen-activated protein kinase 1 (.1.2) AT4G36450 611 / 0 ATMPK14 mitogen-activated protein kinase 14 (.1) AT1G59580 607 / 0 ATMPK2 mitogen-activated protein kinase homolog 2 (.1.2) AT4G01370 425 / 1e-148 ATMPK4 MAP kinase 4 (.1) AT1G07880 420 / 4e-147 ATMPK13 Protein kinase superfamily protein (.1.2) AT4G11330 416 / 4e-145 ATMPK5 MAP kinase 5 (.1) AT3G45640 408 / 3e-142 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1) AT2G43790 407 / 3e-141 ATMAPK6, MAPK6, ATMPK6 MAP kinase 6 (.1) AT1G01560 398 / 2e-138 ATMPK11 MAP kinase 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G119500 [exp] 714 / 0 AT2G18170 662 / 0.0 MAP kinase 7 (.1) Potri.005G231100 [exp] 636 / 0 AT1G59580 617 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.002G032100 [exp] 633 / 0 AT1G59580 624 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.007G139800 [exp] 425 / 2e-148 AT2G43790 684 / 0.0 MAP kinase 6 (.1) Potri.003G131800 [exp] 423 / 6e-148 AT4G01370 656 / 0.0 MAP kinase 4 (.1) Potri.001G099900 [exp] 420 / 1e-146 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Potri.002G162500 [exp] 419 / 1e-146 AT4G01370 684 / 0.0 MAP kinase 4 (.1) Potri.017G010200 [exp] 419 / 4e-146 AT2G43790 677 / 0.0 MAP kinase 6 (.1) Potri.009G066100 [exp] 416 / 3e-145 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025986 [exp] 623 / 0 AT2G18170 617 / 0.0 MAP kinase 7 (.1) Lus10033197 [exp] 622 / 0 AT1G10210 660 / 0.0 mitogen-activated protein kinase 1 (.1.2) Lus10010637 [exp] 621 / 0 AT1G59580 657 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Lus10014283 [exp] 618 / 0 AT2G18170 611 / 0.0 MAP kinase 7 (.1) Lus10017518 [exp] 431 / 3e-151 AT4G01370 632 / 0.0 MAP kinase 4 (.1) Lus10028765 [exp] 429 / 4e-150 AT4G01370 630 / 0.0 MAP kinase 4 (.1) Lus10024668 [exp] 426 / 5e-149 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Lus10007921 [exp] 422 / 1e-147 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10027091 [exp] 418 / 2e-145 AT2G43790 692 / 0.0 MAP kinase 6 (.1) Lus10008339 [exp] 418 / 2e-145 AT2G43790 691 / 0.0 MAP kinase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF06293 [poplar] [flax] Kdo Lipopolysaccharide kinase (Kdo/WaaP) family
Representative CDS sequence Show only first row Show all	>Potri.007G020100.1 pacid=42766135 polypeptide=Potri.007G020100.1.p locus=Potri.007G020100 ID=Potri.007G020100.1.v4.1 annot-version=v4.1 ATGGCAACTTTAGTGGAGCCTCCAAATGGAATTAGGCCAAGAGGGAAGCAATATTACTCAATGTGGGAAACTGTGTTTGAGGTTGATTCGAAGTATGTTC CGATTAAGCCTATAGGTAGAGGGGCCTATGGTGTTGTTTGCTCTTCGATTAATAGGGAAACAAACGAGAAAGTCGCCATCAAGAAAATCAATAATGTGCT TGAGAACAAGATTGATGCTTTGAGGACTCTCAGAGAGTTGAAGCTTCTTAGACATATCCGGCATGAGAATGTGATTGCTTTGAAGGATGTTATGATGCCT ATTCATAGGAGAAGTTTCAAGGATGTGTATTTGGTTTATGAGCTTATGGATACAGATTTGCATCAGATTATCAAGTCCTCGCAACCACTTTCCAATGATC ATTGCAAGTATTTTATATTTCAGTTGCTGCGCGGGCTGAATTATCTCCACTCTGCAAACATTCTTCATCGGGACTTGAAGCCTGGAAATCTCCTTGTCAA TGCCAACTGCGATCTGAAGATATGTGATTTTGGGCTGGCACGAACTAGCAGAGGTGATGAACAGTTCATGACTGAGTATGTTGTCACCCGCTGGTATCGT GCACCTGAGCTGCTACTCTGCTGTGACAACTATGGAACCTCCATTGATGTCTGGTCTGTCGGATGTATCTTTGCTGAGATTCTTGGCCGCAGACCTATCT TCCCTGGAACAGAGTGTCTTAACCAGCTGAAGCTAATTATCAGTGTCCTTGGGAGCCAGAATGATACTGAGCTTGAGTTCATTGATAACCCAAAAGCCAG AAGGTACATCAAAACACTTCCTTATGCAAGGAGAATCCATTTTTCACATCTATACCCTCAAGCTGATCCTTTGGCCATAGACTTGTTGCTAAGGATGCTG GTGTTTGATCCTACTAAGAGAATTAGTGTGACAGAAGCACTTCTACACCCTTACATGTCAGGGCTGCACGATCCAAGACACGACCCACCAGCACGGGTTC CTATCAATCTTGACATAGATGAGAATCTTGGGGAACATATGATTAGGGAGATGATATGGGATGAGATGCTTCATTACCACCCAGAAGTTGTTTTCGCAAA TAGATAG
AA sequence Show only first row Show all	>Potri.007G020100.1 pacid=42766135 polypeptide=Potri.007G020100.1.p locus=Potri.007G020100 ID=Potri.007G020100.1.v4.1 annot-version=v4.1 MATLVEPPNGIRPRGKQYYSMWETVFEVDSKYVPIKPIGRGAYGVVCSSINRETNEKVAIKKINNVLENKIDALRTLRELKLLRHIRHENVIALKDVMMP IHRRSFKDVYLVYELMDTDLHQIIKSSQPLSNDHCKYFIFQLLRGLNYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSRGDEQFMTEYVVTRWYR APELLLCCDNYGTSIDVWSVGCIFAEILGRRPIFPGTECLNQLKLIISVLGSQNDTELEFIDNPKARRYIKTLPYARRIHFSHLYPQADPLAIDLLLRML VFDPTKRISVTEALLHPYMSGLHDPRHDPPARVPINLDIDENLGEHMIREMIWDEMLHYHPEVVFANR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Potri.007G020100 [exp]	0	1
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G138700 [exp]	1.41	0.7989
					Potri.008G030801 [exp]	3.46	0.7318
AT5G66270	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.005G115901 [exp]	6.92	0.6905
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G110500 [exp]	11.48	0.7141	DREB65
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.005G014900 [exp]	12.00	0.6983
AT4G34200		EDA9	embryo sac development arrest ...		Potri.009G096600 [exp]	14.14	0.6641
AT1G01710			Acyl-CoA thioesterase family p...		Potri.014G083300 [exp]	14.17	0.7452
AT1G20100			unknown protein		Potri.002G019200 [exp]	21.56	0.7259
AT3G63380			ATPase E1-E2 type family prote...		Potri.016G009500 [exp]	25.57	0.7243
AT1G74510			Galactose oxidase/kelch repeat...		Potri.015G063200 [exp]	27.11	0.7243

Compare expression of checked genes

Potri.007G020100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.