Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-LJPLP.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36490 731 / 0 ATSFH12 SEC14-like 12 (.1) AT2G18180 729 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21540 662 / 0 ATSFH3 SEC14-like 3 (.1.2.3) AT4G34580 647 / 0 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39180 613 / 0 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39170 598 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21520 596 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G16380 568 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G19650 536 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75370 513 / 9e-177 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G119700 [exp] 1038 / 0 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.009G119400 [exp] 698 / 0 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.004G157600 [exp] 692 / 0 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3) Potri.004G157700 [exp] 626 / 0 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.009G119500 [exp] 617 / 0 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G032600 [exp] 551 / 0 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G230500 [exp] 536 / 0 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G243000 [exp] 441 / 3e-148 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.011G168300 [exp] 400 / 1e-132 AT1G55690 710 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028332 [exp] 703 / 0 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10025988 [exp] 684 / 0 AT2G18180 662 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10041779 [exp] 659 / 0 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10040432 [exp] 628 / 0 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3) Lus10023547 [exp] 622 / 0 AT2G21540 664 / 0.0 SEC14-like 3 (.1.2.3) Lus10026356 [exp] 605 / 0 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10042302 [exp] 596 / 0 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10040431 [exp] 584 / 0 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023546 [exp] 580 / 0 AT2G21520 924 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10042303 [exp] 561 / 0 AT2G21540 598 / 0.0 SEC14-like 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain CL0214 [poplar] [flax] UBA PF03765 [poplar] [flax] CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.007G020300.1 pacid=42765099 polypeptide=Potri.007G020300.1.p locus=Potri.007G020300 ID=Potri.007G020300.1.v4.1 annot-version=v4.1 ATGGCAACAGCAGTTTGTGTACCTTTGTCTCCCAACCCAGTGCCAGAGATGGAACATTCTGGGGATGAGAGGAAGAAAAGAATTGAATCACTGAAAAAGA AGGCCATTAGTGCCTCCAACAAATTCAGGCATTCATTAACAAGAAAGGGTCGCAGAAGCAGCAAAGTCATGTCCGTTGAAATTGAGGATGTGCACGATGT AGAGGAGCTAAAGGTTGTCGATGCTTTCCGTCAAGTGCTTATATTGGAGGAATTGCTTCCTTCAAAGCATGATGATTATCATATGATGCTCAGATTCTTG AAGGCCAGGAAATTCGATATCGAGAAAACAAAGCAAATGTGGTCTGATATGCTTCAGTGGAGGAAGGAATTTGGTGCTGACACAGTCTTGGAGGAGTTCG AATTCCAGGAACTCAGTGAAGTCTTGGAACATTATCCCCAAGGGCATCATGGAGTAGATAAAGAAGGAAGACCTGTTTACATTGAGCAATTAGGCAAAGC AGATCCTGCCAAGTTACTGCAAGTCACATCCATGGACCGCTATGTCAAATACCATGTACGAGAGTTTGAGAGAACTTTTGATGCCAAGTTTCCAGCTTGT TCACTAGCAGCAAAGAGGCACATTGATCAAAGTACAACCATCTTGGATGTGCAAGGAGTGGGCCTCAAAAGCTTAACTAAAGCTGCAAGGGATCTCATCT CTCGCCTTCAGAAGATTGATGGTGACAATTATCCTGAGACCTTGAACCGCATGTTCATCATCAATGCGGGTTCTGGATTCAGGATGCTGTGGAATACCAT TAAATCTTTCCTTGACCCTAAAACCACAGCAAAGATCCATGTTCTTGGCAATAAGTATCAGAGCAAATTGCTTGAGATAATTGATGCCAGTGAGTTGCCA GAGTTTCTTGGAGGTACTTGCACCTGTGCTGACAAAGGAGGCTGTATGCGTTCTGATAAAGGCCCTTGGAATGACCCAGAGATTATGAAGATGGTTCAAG ATGGCGATCACAAATGTGCAAAGAAATGCGGAACTCATTATCCTGATGAAAAAACAATCTGTGAGGATGACCTAAGCAACTCAAAGCTGCATGAGGCTCC TAAGGTGGAGTCAGCTCCACAGCTTCCACAGCCCTCCTTTGTTCCTGAGAAGGCTTACAAGCTAGAGGACTATCAGCTTATGGTTGATAAATCTGTGGAT ATGAGCTGGAAAAAAGTGGTAAACAATGATTGCTATACTCAGTATGATGCTTGCAAGGCTCCCCAGGCAATCAACTCACCACTCTTCACTGGTGTCATGG CTTTGGTTACGGGCATTGTCACCATGATTAAAGTGACACGCAATGTTCCCAGGAAGCTGACCGATGCCACCATCTACTCCAATCCTGACTATTGCGATGA CACATCGGTGAAAGGCCGGGAACAACAGTCACCTGCCACCTCTAGTGCAGATTACATGACTGTCTTGAAGCGCATGGCTGAATTGGAAGATAAAGTGAGT GTTTTGAGTTCTAAGCCTGTTTCCATGCCACCCGAAAAGGAGGAAATGTTGAATGCTGCTATAAGCCGTGTTGAGGCCTTGGAGCAAGAGCTTATGGCAA CCAAGAAGGCTCTCGAGGACTCACTTGCTCAACAAGCAGAGCTTGTCGCTTATCTTGAGAAGAAGAAGAAGAAGAAGAAGATGTTGTTCTGGTAA
AA sequence Show only first row Show all	>Potri.007G020300.1 pacid=42765099 polypeptide=Potri.007G020300.1.p locus=Potri.007G020300 ID=Potri.007G020300.1.v4.1 annot-version=v4.1 MATAVCVPLSPNPVPEMEHSGDERKKRIESLKKKAISASNKFRHSLTRKGRRSSKVMSVEIEDVHDVEELKVVDAFRQVLILEELLPSKHDDYHMMLRFL KARKFDIEKTKQMWSDMLQWRKEFGADTVLEEFEFQELSEVLEHYPQGHHGVDKEGRPVYIEQLGKADPAKLLQVTSMDRYVKYHVREFERTFDAKFPAC SLAAKRHIDQSTTILDVQGVGLKSLTKAARDLISRLQKIDGDNYPETLNRMFIINAGSGFRMLWNTIKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELP EFLGGTCTCADKGGCMRSDKGPWNDPEIMKMVQDGDHKCAKKCGTHYPDEKTICEDDLSNSKLHEAPKVESAPQLPQPSFVPEKAYKLEDYQLMVDKSVD MSWKKVVNNDCYTQYDACKAPQAINSPLFTGVMALVTGIVTMIKVTRNVPRKLTDATIYSNPDYCDDTSVKGREQQSPATSSADYMTVLKRMAELEDKVS VLSSKPVSMPPEKEEMLNAAISRVEALEQELMATKKALEDSLAQQAELVAYLEKKKKKKKMLFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36490		ATSFH12	SEC14-like 12 (.1)		Potri.007G020300 [exp]	0	1	Pt-LJPLP.1
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Potri.001G107100 [exp]	5.56	0.9884
AT1G30870			Peroxidase superfamily protein...		Potri.010G175100 [exp]	5.91	0.9934
					Potri.009G020201 [exp]	8.36	0.9934
					Potri.003G143250 [exp]	8.94	0.9684
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Potri.019G081300 [exp]	12.84	0.9783
AT1G68780			RNI-like superfamily protein (...		Potri.008G114700 [exp]	14.07	0.9741
AT3G50560			NAD(P)-binding Rossmann-fold s...		Potri.007G040900 [exp]	14.38	0.9733
AT5G05800			unknown protein		Potri.014G061450 [exp]	16.73	0.9934
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Potri.007G005000 [exp]	18.16	0.9467	SMH905
					Potri.008G135001 [exp]	18.65	0.9929

Compare expression of checked genes

Potri.007G020300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.