Plant FIBer expression Database

Potri.007G021000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G66420 966 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G120100
[exp]
565 / 0 AT5G66420 555 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014286
[exp]
1043 / 0 AT5G66420 1011 / 0.0 unknown protein
Lus10025992
[exp]
1040 / 0 AT5G66420 1006 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06792 UPF0261 Uncharacterised protein family (UPF0261)
CL0151 PK_TIM PF09370 PEP_hydrolase Phosphoenolpyruvate hydrolase-like
Representative CDS sequence
>Potri.007G021000.8 pacid=42766403 polypeptide=Potri.007G021000.8.p locus=Potri.007G021000 ID=Potri.007G021000.8.v4.1 annot-version=v4.1
ATGGCCCATCTCCGCAAACCTCCTCGAGTTTTCTGTATTGGAACAGCTGATACTAAGCTTGACGAGCTCCTATTCCTCTCTGATTCAGTCAGATCCAATC
TCAATTCTGCTTCTAAGGTACAGGTAGTTGTTGTTGATGTTTCGGTTGGTAGCAAAGAGATTGAGAGTGTTGGAGACTTTGAGTTTGTGTCCAGAAAGGA
TCTTCTAGCTCCCTATCCTGGTCCAGCTGAAACAACACAAAATGTGCTTCCAGATGATAGAGGCCAAGCTATTGCTGTAATGAGTAGAGCTCTTAAGAAT
TTCTTAGAAAAAGCTCAAGTGGACGGTGCTCTTGCTGGATCTGTTGGTCTTGGAGGCAGTGGGGGCACATCTTTAATATCATCTGCTTTAAGGTCTCTTC
CTATTGGATTGCCGAAAGTCATTGTAACTACTGTTGCTAGTGGTCAAACTGAACCTTACATTGGATCATCGGATTTGATACTCTTTCCATCTGTCGTCGA
TGTCTGTGGGATTAATAGTGTGAGTAGGGTTGTGTTATCGAATGCCGGTGCTGCTTTTGCTGGAATGGTGAATGGGAGGCTTGGGAGATCTAATGTTTAT
TCTAGTGATAATGAGAGGTTCACTGTTGGTTTAACCATGTTTGGAGTTACAACTCCGTGTGTGAATGCTGTGAAGGAAAGATTGGTAAAAGAAGGTTACG
AGACCCTGGTTTTCCATGCCACTGGGACTGGGGGCAAGGCCATGGAATCACTTGTTAGAGAAGGACATATACAGGGTGTTCTAGACATTACGACCACTGA
GGTTGCAGATTATGTAGTTGGAGGTGTTATGGCTTGCGATAGTTCCCGTTTTGATGCGATCATAGAGAAGAAGATTCCTTTAGTGTTGAGTGTAGGAGCC
TTGGACATGGTCAACTTTGGTGCTAAGAATACCATACCTTCTAATTTTCAGCAAAGAAAGATTTATGTCCACAATGAGCAGGTCTCAATCATGCGAACCA
CAGTTGATGAGAATAAGAAGTTTGCTGGTTTTATAGCCGATAAGCTCAACAAATCATCATCAAAGGTCCGTGTATGCCTGCCACTAAAGGGTATCTCAGC
TTTGGATTCCCCTGACAAACCCTTTCATGATCCTGAGGCTACTGATACTCTACTAACTGAACTACAGAAGCTTATACTAACAACAGAAGATCGGCAGGTA
AAGGTGTATCCTTATCACATCAATGACCCTGAGTTTGCAGATGCATTGGTTGACACATTCTTAGAGATTAGTTTGGGTAAGCCTAAGTGTTCCACTCATC
TCCAAAATCCTGTTTCTGAACCCAATCTGGAGCTTCAGGACGTTTCCAATCTGAATTCGTCAAGCTGTGAGACCATTTGTTACAGCCCAAGCAACTATCC
AGACGCAAGACCAGAGACTTTACAGAAGACGCAGGCAATATTGCAGCATCTCAAAGATCAAATAGATAAAGGATTTCCCATAATTGGAGCTGGTGCAGGG
ACCGGTATATCAGCAAAGTTTGAAGAAGCAGGTGGTGTTGATTTAATAGTACTGTACAACTCAGGACGCTTTCGCATGGCAGGAAGGGGCTCTTTAGCTG
GTTTATTGCCTTTTGCTGATGCAAATGCTATAGTAATTGACATGGCCAATGAAGTCTTACCAGTTGTCAAGGAGGTGCCGGTTCTTGCTGGAGTATGTGG
AACTGATCCTTTCCGCCGAATGGATTACTTCTTAAAGCAGGTGGAATCAATTGGGTTCTGTGGGGTGCAAAATTTTCCAACTGTTGGGCTTTTTGATGGT
AATTTTAGACAAAATCTTGAAGAGACAGGAATGGGATATGGATTGGAGGTCCAGATGATTGAAAAGGCACATAAAATGGGTCTCTTGACAACTCCATATG
CTTTTAATGAAAGTGAAGCCAGGGAAATGGCAAAAGTTGGTGCTGATATTATTGTTGCTCATATGGGGCTGACTACATCTGGGTCTATTGGTGCAAAAAC
AGCTGTCTCATTAGATGAAAGTGTGTTTCAGGTGCAAGCTATTGCAGATGCTGCACATAAGATCAACCCCAATGTCATTGTGCTGTGTCATGGAGGCCCC
ATTTCTGGACCCAAAGAAGCAGAATTTATATTGAATAGAACCAAGGGAGTTCATGGATTCTATGGTGCATCAAGCATGGAGAGACTGCCTGTTGAACAAG
CCATTACCAGCACAATGAAACAGTACAAATCAATTTCCATCAAATGA
AA sequence
>Potri.007G021000.8 pacid=42766403 polypeptide=Potri.007G021000.8.p locus=Potri.007G021000 ID=Potri.007G021000.8.v4.1 annot-version=v4.1
MAHLRKPPRVFCIGTADTKLDELLFLSDSVRSNLNSASKVQVVVVDVSVGSKEIESVGDFEFVSRKDLLAPYPGPAETTQNVLPDDRGQAIAVMSRALKN
FLEKAQVDGALAGSVGLGGSGGTSLISSALRSLPIGLPKVIVTTVASGQTEPYIGSSDLILFPSVVDVCGINSVSRVVLSNAGAAFAGMVNGRLGRSNVY
SSDNERFTVGLTMFGVTTPCVNAVKERLVKEGYETLVFHATGTGGKAMESLVREGHIQGVLDITTTEVADYVVGGVMACDSSRFDAIIEKKIPLVLSVGA
LDMVNFGAKNTIPSNFQQRKIYVHNEQVSIMRTTVDENKKFAGFIADKLNKSSSKVRVCLPLKGISALDSPDKPFHDPEATDTLLTELQKLILTTEDRQV
KVYPYHINDPEFADALVDTFLEISLGKPKCSTHLQNPVSEPNLELQDVSNLNSSSCETICYSPSNYPDARPETLQKTQAILQHLKDQIDKGFPIIGAGAG
TGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAIVIDMANEVLPVVKEVPVLAGVCGTDPFRRMDYFLKQVESIGFCGVQNFPTVGLFDG
NFRQNLEETGMGYGLEVQMIEKAHKMGLLTTPYAFNESEAREMAKVGADIIVAHMGLTTSGSIGAKTAVSLDESVFQVQAIADAAHKINPNVIVLCHGGP
ISGPKEAEFILNRTKGVHGFYGASSMERLPVEQAITSTMKQYKSISIK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G66420 unknown protein Potri.007G021000
[exp]
0 1
AT1G71070 Core-2/I-branching beta-1,6-N-... Potri.008G006500
[exp]
3.60 0.9213
AT5G50420 O-fucosyltransferase family pr... Potri.003G073500
[exp]
5.29 0.9138 FUT13.1
AT5G64030 S-adenosyl-L-methionine-depend... Potri.005G065200
[exp]
8.83 0.9044
AT3G61750 Cytochrome b561/ferric reducta... Potri.014G098700
[exp]
16.00 0.8967
AT3G12955 SAUR-like auxin-responsive pro... Potri.011G143400
[exp]
17.29 0.8696 SAUR5
AT1G79830 GC5 golgin candidate 5 (.1.2.3.4) Potri.003G052100
[exp]
19.62 0.8800
AT5G12850 C3HZnF PEI1 CCCH-type zinc finger protein ... Potri.001G258400
[exp]
19.89 0.8500
AT5G01430 Got1/Sft2-like vescicle transp... Potri.007G124400
[exp]
19.89 0.8478
AT1G24030 Protein kinase superfamily pro... Potri.010G095900
[exp]
20.24 0.8899
AT4G00750 S-adenosyl-L-methionine-depend... Potri.014G075700
[exp]
20.78 0.8832

Potri.007G021000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.