Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11480 317 / 2e-106 BSMT1, ATBSMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19640 317 / 4e-106 JMT jasmonic acid carboxyl methyltransferase (.1) AT5G66430 310 / 9e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04380 304 / 4e-101 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G36470 300 / 9e-100 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G38020 298 / 4e-99 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04370 297 / 2e-98 NAMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G21950 288 / 3e-95 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G14060 273 / 2e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G55250 206 / 6e-63 AtIAMT1, IAMT1 IAA carboxylmethyltransferase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G022002 [exp] 409 / 1e-142 AT3G11480 309 / 3e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022400 [exp] 398 / 2e-138 AT3G11480 311 / 4e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022000 [exp] 383 / 2e-132 AT3G11480 300 / 7e-100 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G230100 [exp] 362 / 4e-124 AT1G19640 389 / 1e-134 jasmonic acid carboxyl methyltransferase (.1) Potri.019G022402 [exp] 345 / 2e-117 AT3G11480 261 / 1e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G045900 [exp] 333 / 1e-112 AT1G19640 271 / 3e-88 jasmonic acid carboxyl methyltransferase (.1) Potri.007G021400 [exp] 320 / 2e-107 AT4G36470 469 / 4e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022200 [exp] 245 / 4e-79 AT5G04370 227 / 1e-71 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G359000 [exp] 217 / 2e-67 AT5G55250 585 / 0.0 IAA carboxylmethyltransferase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025993 [exp] 473 / 1e-166 AT1G19640 288 / 1e-93 jasmonic acid carboxyl methyltransferase (.1) Lus10041380 [exp] 409 / 1e-142 AT4G36470 278 / 4e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024671 [exp] 394 / 4e-136 AT5G66430 280 / 2e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036550 [exp] 379 / 1e-130 AT3G11480 249 / 8e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036548 [exp] 384 / 3e-129 AT5G66430 250 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036547 [exp] 366 / 1e-125 AT5G66430 243 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041776 [exp] 288 / 7e-95 AT4G36470 421 / 3e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024271 [exp] 258 / 1e-83 AT1G19640 315 / 2e-105 jasmonic acid carboxyl methyltransferase (.1) Lus10043177 [exp] 193 / 4e-58 AT5G55250 532 / 0.0 IAA carboxylmethyltransferase 1 (.1.2) Lus10032569 [exp] 156 / 2e-44 AT5G55250 400 / 2e-139 IAA carboxylmethyltransferase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03492 [poplar] [flax] Methyltransf_7 SAM dependent carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.007G021300.1 pacid=42765609 polypeptide=Potri.007G021300.1.p locus=Potri.007G021300 ID=Potri.007G021300.1.v4.1 annot-version=v4.1 ATGGAGGTTGCTCAAGTGCTTCACATGAATGGGGGAAGGGGAGAGACAAGTTATGCACAGAACTCACTGGTTCAGCGAAAGGTGATATCCATCACAATGC GAATCGCAGAAGAAGCCATAACCAATATCTACTGCAACACCTTCCCTACAAGTTTAGCCATAGCAGACTTGGGATGTTCATCAGGACCAAACACTCTATA TGCAGTTTCTGAACTTGTCAAAGTAGTGGACGAGGTCCGCAGAAAACTAGGCCATCAATCACCAGAATATCAGGTGCTGTTGAATGATCTTCCAGGCAAT GACTTCAATGCCATTTTCAAGTCATTGGCAGGCTTCCAAGAAAATCTGAAAAAACAAATGGGAGATGGGTTTGGGCCATGTTTTTTTGCCGGAGTCCCTG GTTCTTTCTATTGCAGGCTTTTCCGTGCCAAGAGCCTGCATTTTGTCCATTCTTCCTACAGTCTCATGTGGCTGTCTCGGGTCCCTGAAGGGCTGGAGGG TAACAAGGGGAACATTTATATGGCCAGCACAAGTCCACCAAGCGTGCTTAAGGCTTATTACATGCAGTTCCAAACGGATTTTACTCTGTTTTTGAAGTGT CGCTCGGAGGAGCTGGTGGCAGGAGGGCGCATGGTTTTAACAATTTTGGGTAGAAGAAGCGAAGATCCTTCCAGCAAAGAGTGTTGCTACATCTGGGAGC TTTTGGCTGTGGCTCTCAATGAAATGGTCTTAGAGGGGATCATAGAGGAAGAGAAATTTGACTCCTTCAACATTCCTCAATACACTCCATCTCCATTTGA AGTGGAATCACAAGTTAAAAAGGAAGGGTCCTTTACCATTGATCGTTTGGAGGTATCTCAAGTCAATTGGAATGCTTACGATAATGAAGTTTACCAGTCT GCAGCTTTTGAAGATGGTGGATACAATGTTGCTAAGTGCATGAGAGCTGTGGCAGAGCCCTTGCTTGTTAGCCACTTCGGTGAAGCAATTATCGATGAGG TTTTCTCTAGGTATGGAGAAATTGTGGCCAGTCGCATGTCAAAAGAGAAGACTGAATTTGTCAATGTGACTGTTTCCGTGACTAGAAAGGGATGA
AA sequence Show only first row Show all	>Potri.007G021300.1 pacid=42765609 polypeptide=Potri.007G021300.1.p locus=Potri.007G021300 ID=Potri.007G021300.1.v4.1 annot-version=v4.1 MEVAQVLHMNGGRGETSYAQNSLVQRKVISITMRIAEEAITNIYCNTFPTSLAIADLGCSSGPNTLYAVSELVKVVDEVRRKLGHQSPEYQVLLNDLPGN DFNAIFKSLAGFQENLKKQMGDGFGPCFFAGVPGSFYCRLFRAKSLHFVHSSYSLMWLSRVPEGLEGNKGNIYMASTSPPSVLKAYYMQFQTDFTLFLKC RSEELVAGGRMVLTILGRRSEDPSSKECCYIWELLAVALNEMVLEGIIEEEKFDSFNIPQYTPSPFEVESQVKKEGSFTIDRLEVSQVNWNAYDNEVYQS AAFEDGGYNVAKCMRAVAEPLLVSHFGEAIIDEVFSRYGEIVASRMSKEKTEFVNVTVSVTRKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Potri.007G021300 [exp]	0	1
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Potri.010G133200 [exp]	2.82	0.8597
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Potri.010G133300 [exp]	4.89	0.8383
AT1G58122		CPuORF45	conserved peptide upstream ope...		Potri.002G104450 [exp]	7.48	0.8092
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.002G150500 [exp]	10.24	0.8026	CYP76.3
AT4G30810		SCPL29	serine carboxypeptidase-like 2...		Potri.018G103100 [exp]	20.00	0.6968
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.012G079100 [exp]	20.04	0.8320
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Potri.019G023018 [exp]	23.23	0.7133
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.001G147300 [exp]	26.70	0.7132
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413300 [exp]	28.84	0.7129
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Potri.002G094800 [exp]	37.09	0.8017

Compare expression of checked genes

Potri.007G021300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.