Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36470 469 / 4e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19640 268 / 9e-87 JMT jasmonic acid carboxyl methyltransferase (.1) AT5G66430 259 / 6e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G11480 253 / 5e-81 BSMT1, ATBSMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G38020 243 / 2e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04380 238 / 3e-75 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04370 237 / 1e-74 NAMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G21950 234 / 6e-74 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G14060 220 / 1e-68 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G55250 206 / 6e-63 AtIAMT1, IAMT1 IAA carboxylmethyltransferase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G021300 [exp] 319 / 3e-107 AT3G11480 318 / 1e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022002 [exp] 297 / 1e-98 AT3G11480 309 / 3e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022400 [exp] 296 / 3e-98 AT3G11480 311 / 4e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G230100 [exp] 294 / 3e-97 AT1G19640 389 / 1e-134 jasmonic acid carboxyl methyltransferase (.1) Potri.019G022000 [exp] 279 / 1e-91 AT3G11480 300 / 7e-100 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G045900 [exp] 253 / 2e-81 AT1G19640 271 / 3e-88 jasmonic acid carboxyl methyltransferase (.1) Potri.019G022402 [exp] 252 / 6e-81 AT3G11480 261 / 1e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G049900 [exp] 230 / 2e-72 AT1G15125 309 / 1e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G104800 [exp] 218 / 1e-67 AT1G68040 328 / 4e-111 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041776 [exp] 464 / 4e-164 AT4G36470 421 / 3e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10025993 [exp] 299 / 6e-98 AT1G19640 288 / 1e-93 jasmonic acid carboxyl methyltransferase (.1) Lus10041380 [exp] 265 / 7e-86 AT4G36470 278 / 4e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024671 [exp] 259 / 3e-83 AT5G66430 280 / 2e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024271 [exp] 249 / 4e-80 AT1G19640 315 / 2e-105 jasmonic acid carboxyl methyltransferase (.1) Lus10036548 [exp] 251 / 7e-78 AT5G66430 250 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036550 [exp] 240 / 5e-76 AT3G11480 249 / 8e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036547 [exp] 231 / 1e-72 AT5G66430 243 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10043177 [exp] 216 / 8e-67 AT5G55250 532 / 0.0 IAA carboxylmethyltransferase 1 (.1.2) Lus10032569 [exp] 187 / 4e-56 AT5G55250 400 / 2e-139 IAA carboxylmethyltransferase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03492 [poplar] [flax] Methyltransf_7 SAM dependent carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.007G021400.2 pacid=42766689 polypeptide=Potri.007G021400.2.p locus=Potri.007G021400 ID=Potri.007G021400.2.v4.1 annot-version=v4.1 ATGATTACTAGCACCAGAGCAATGAAACCGATTGGCACGAACCAAAATATGGATGTTGAGAAAGTCTTTCACATGACAGGAGGTACTGGAGATAATAGCT ATGCCAAGAACTCCTCATACCAGAAGAAGGTATCTGACATGGTCAAGCACATAACCATGGAAGCATTACAAGAAGTCTATCTTGCACTAGCACCAAAGAG CTTAGGCATAGCTGACTTGGGTTGCTCCAGTGGATCTAACTCATTATCAATCATCAAAGATATTGTTGAAGCTGTAGAAGCAGCAAGTTGTAAAATCATG ATCCCAGCACCTGAGTTTAGAGTGTATCTTAATGATCTTCCGACTAATGACTTCAATTCAATCTTTAAGTCGTTGCCAGATTTTTACAGGGACCTCAACA AAGAAAGAAGTGATGGGCCTCCCTTGCTTTTCATAGCAGGTTATCCTGGTTCATTTTATGGGCGACTTTTCCCCAACGATTGCTTGCACTTTGTTCATTC GTCATACAGTTTGCACTGGCTTTCCAAAGTTCCTCCATCACTTTATGATAAGCAAGGCAAACCGATTAACAAGGGCAGCATTCACATTTCTGAATCAAGC CCTCCACTTGTATCCCAAGCATACTATGCGCAGTTCCAAGAGGACTTCTCGTTGTTCCTTCGCTCGAGGTCTGAAGAACTTACTACTGGAGGGCGTATGG TGCTGATAATGTTAGGAAGAATAGGTCCAGATCATGTTGATAGAGGCAACTCATTCTACTGGGAACTCCTTTCAAGATCTCTTGCCATTTTGGCTACCCA GGGGGAGATCGAGAAGGAAGACATAGATTCTTATGATGTACATTTCTATGCACCAACCAAGGATGAAATGGAAGCTGAGATAAGGAGAGAAGGTTCCTTC GAATTGGAAAGATTTGAGATGTTTGAAACAGAGAAGGAACTTTACAAGGTTAGTGAAAACTATGGAACTGAAGTTGCAATGACAGTTAGGGCTATCCAAG AATCCATGCTTTCCCACCATTTTGGAGAAGGAATTTTAGACGCTTTATTTGAGATCTATGGAAGAATGGTAGAAGAGGAAATGCTTAAAGAAGAAATTAA TCCCATTACTTTTGTTGTAGTTCTTAGAAAATTATAA
AA sequence Show only first row Show all	>Potri.007G021400.2 pacid=42766689 polypeptide=Potri.007G021400.2.p locus=Potri.007G021400 ID=Potri.007G021400.2.v4.1 annot-version=v4.1 MITSTRAMKPIGTNQNMDVEKVFHMTGGTGDNSYAKNSSYQKKVSDMVKHITMEALQEVYLALAPKSLGIADLGCSSGSNSLSIIKDIVEAVEAASCKIM IPAPEFRVYLNDLPTNDFNSIFKSLPDFYRDLNKERSDGPPLLFIAGYPGSFYGRLFPNDCLHFVHSSYSLHWLSKVPPSLYDKQGKPINKGSIHISESS PPLVSQAYYAQFQEDFSLFLRSRSEELTTGGRMVLIMLGRIGPDHVDRGNSFYWELLSRSLAILATQGEIEKEDIDSYDVHFYAPTKDEMEAEIRREGSF ELERFEMFETEKELYKVSENYGTEVAMTVRAIQESMLSHHFGEGILDALFEIYGRMVEEEMLKEEINPITFVVVLRKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36470			S-adenosyl-L-methionine-depend...		Potri.007G021400 [exp]	0	1
AT3G18280			Bifunctional inhibitor/lipid-t...		Potri.015G044500 [exp]	6.70	0.6403
AT5G10860		CBSX3	CBS domain containing protein ...		Potri.017G000100 [exp]	7.93	0.6344
AT5G06080	AS2	LBD33	LOB domain-containing protein ...		Potri.010G200400 [exp]	10.00	0.6386	LBD33.1
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Potri.013G152400 [exp]	21.84	0.6008	Pt-XTH9.2
AT2G25790			Leucine-rich receptor-like pro...		Potri.018G045500 [exp]	24.73	0.6310
AT2G25810		TIP4;1	tonoplast intrinsic protein 4;...		Potri.006G239700 [exp]	27.71	0.5603	TIP4.1
AT3G18280			Bifunctional inhibitor/lipid-t...		Potri.012G054300 [exp]	30.46	0.6029
AT1G18470			Transmembrane Fragile-X-F-asso...		Potri.015G050300 [exp]	33.54	0.5878
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Potri.010G154300 [exp]	40.89	0.5949
AT5G65640	bHLH	bHLH093	beta HLH protein 93 (.1.2)		Potri.002G108400 [exp]	50.00	0.5297

Compare expression of checked genes

Potri.007G021400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.