Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66440 147 / 5e-43 unknown protein AT4G34560 53 / 3e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G120300 [exp] 422 / 2e-150 AT5G66440 134 / 4e-38 unknown protein Potri.004G157300 [exp] 113 / 4e-30 AT4G34560 107 / 9e-29 unknown protein Potri.009G119000 [exp] 89 / 4e-21 AT4G34560 90 / 8e-22 unknown protein Potri.002G033100 [exp] 52 / 2e-07 AT5G66440 78 / 1e-16 unknown protein Potri.005G229800 [exp] 51 / 3e-07 AT5G66440 63 / 2e-11 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028329 [exp] 134 / 2e-37 AT5G66440 117 / 1e-31 unknown protein Lus10041775 [exp] 131 / 2e-36 AT5G66440 123 / 1e-33 unknown protein Lus10040435 [exp] 76 / 4e-16 AT5G66440 104 / 3e-27 unknown protein Lus10025994 [exp] 74 / 2e-15 AT5G66440 91 / 5e-22 unknown protein Lus10023551 [exp] 74 / 3e-15 AT5G66440 95 / 2e-23 unknown protein Lus10042306 [exp] 69 / 1e-13 AT5G66440 97 / 2e-24 unknown protein Lus10014287 [exp] 61 / 4e-11 AT5G66440 79 / 4e-18 unknown protein Lus10026353 [exp] 60 / 2e-10 AT4G34560 101 / 2e-26 unknown protein Lus10024273 [exp] 42 / 0.0003 AT5G66440 86 / 1e-19 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G021500.1 pacid=42766749 polypeptide=Potri.007G021502.1.p locus=Potri.007G021500 ID=Potri.007G021500.1.v4.1 annot-version=v4.1 ATGGATTTCAACAATTTTGATACTGTAAAAGCAGAGAAAGTTAATGCAATGCTGAAATACAACAACTTACAACCCCTAAGAAAAGTGTTTCGTTTACTGG AATTCTGTCTTGCTTTAATCCTCTTCTCATGGATCTTTAACAAGCTTCCATTTGCTGTCAAGATTTCCGGGGAGTTTCTCCGGCATCTAGCCGGCATAAT AGCCAGCCCCCTCTTTGTTTTCTTGCTTTCTAACGGGATAATTGCTACCTTGATAGCGAAATCCGGCAGATTCTCCGGCGAGAATCACGGCGCAGACAAT GCTGATACTCAACTGTACGAGGAGTTGGTAAAAAACACTGACAGCAACCGCAACTGTCCAAAGCCATTTCTCTCAGAGAATCCTGATTTGTTATTGTCTC ATGCCGCGACAGCGACAGCGACAGAGATGGAGACAACAACAAAAGAGGAGGAAGTAGTGTTCCAAGAAAAACATATCGTCATCTCCGAAGAGAATACTTC CACTCGCACGCGTGAAAATGGGGATGAAGATCACGCTCCTGACGCGGAAATATATTCAGACTTGGATTCTGACTGCGAAAACATGAAATTTCGGAGGACA AAGTCGGAGAAGATGGAGAGGAAGAATTATGTGAAGGAAAAGAAGCAGCTGCTGCGGAGATCGGAGACAGAGAAGTTGGGGTCAGGAGAGGAGAATTTGC TTTGCAGAGAGAATGAGTTGAGTGATGAAGAATTTCAGCGTGCCGTTGATGAGTTCATTGCAAGGAATTTGATGTTTCGTCGACAAGAGTCCATGTCTGT TGTTGTTCAAAATCAGATCACAAATATTGCTGAAATTGAGAAACAATGTTAA
AA sequence Show only first row Show all	>Potri.007G021500.1 pacid=42766749 polypeptide=Potri.007G021502.1.p locus=Potri.007G021500 ID=Potri.007G021500.1.v4.1 annot-version=v4.1 MDFNNFDTVKAEKVNAMLKYNNLQPLRKVFRLLEFCLALILFSWIFNKLPFAVKISGEFLRHLAGIIASPLFVFLLSNGIIATLIAKSGRFSGENHGADN ADTQLYEELVKNTDSNRNCPKPFLSENPDLLLSHAATATATEMETTTKEEEVVFQEKHIVISEENTSTRTRENGDEDHAPDAEIYSDLDSDCENMKFRRT KSEKMERKNYVKEKKQLLRRSETEKLGSGEENLLCRENELSDEEFQRAVDEFIARNLMFRRQESMSVVVQNQITNIAEIEKQC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66440			unknown protein		Potri.007G021500 [exp]	0	1
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Potri.005G117600 [exp]	2.82	0.7669
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Potri.001G278400 [exp]	8.30	0.7465	Pt-AS1.2
AT1G23170			Protein of unknown function DU...		Potri.017G124300 [exp]	18.02	0.6527
AT1G55790			Domain of unknown function (DU...		Potri.011G165600 [exp]	20.29	0.7443
AT3G25640			Protein of unknown function, D...		Potri.010G131600 [exp]	26.92	0.6510
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Potri.008G190800 [exp]	28.35	0.6215
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.017G040600 [exp]	30.08	0.7292
AT4G26490			Late embryogenesis abundant (L...		Potri.011G165500 [exp]	38.76	0.6927
AT4G27190			NB-ARC domain-containing disea...		Potri.001G444500 [exp]	51.76	0.6396
AT3G08880			unknown protein		Potri.016G122350 [exp]	54.49	0.6325

Compare expression of checked genes

Potri.007G021500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.