Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66450 240 / 1e-78 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) AT3G50920 218 / 5e-70 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) AT5G03080 44 / 4e-05 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G120400 [exp] 381 / 2e-134 AT5G66450 219 / 9e-71 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Potri.006G130700 [exp] 57 / 2e-09 AT5G03080 313 / 2e-109 Phosphatidic acid phosphatase (PAP2) family protein (.1) Potri.016G086700 [exp] 51 / 2e-07 AT5G03080 297 / 4e-103 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028328 [exp] 266 / 6e-89 AT5G66450 232 / 2e-76 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10041774 [exp] 248 / 9e-82 AT5G66450 229 / 3e-75 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10028327 [exp] 167 / 4e-50 AT3G50920 156 / 2e-46 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10028326 [exp] 155 / 7e-46 AT5G66450 160 / 2e-48 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10041773 [exp] 125 / 9e-35 AT3G50920 101 / 7e-30 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10026489 [exp] 53 / 6e-08 AT5G03080 327 / 1e-114 Phosphatidic acid phosphatase (PAP2) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [poplar] [flax] pap2 PF01569 [poplar] [flax] PAP2 PAP2 superfamily
Representative CDS sequence Show only first row Show all	>Potri.007G021600.1 pacid=42765474 polypeptide=Potri.007G021600.1.p locus=Potri.007G021600 ID=Potri.007G021600.1.v4.1 annot-version=v4.1 ATGATGTCAACTCCTGCTATTCTCCACAAACCCACTTTCAAATCCTTGCTTTTTAGTCCTTTTAAGCTTAATCAAGCGAAACCCATCTCGTTCCATCGGT TTCCTGCTTCAAAATCTGATTTTTTTAGTTCAAAGAATAAAGCTTTGTCAAAGAACATGACTGAATTGGTCAGAATGTCTGCCTTTAGAGGTGGTAATGG TAGTGACAGTGAAGAAAGTACAGGGTTGTTTCAGCAAGAAGCTGTTGTTGATGGGCTTAACGAGTTTCAAAGTGGGCTGTTGGCTGATGGACTTGAAGCC ACTCTCAACCGCCTGAGCAAATGGCTTGTAGCTGCTCTATTCGGTGCTGTCATTCTTTGGAGGCATGATGCAGAAGCCATGTGGGCTGTTTTGGGGTCAA TTGTAAACTCAATCCTCTCTGTAATCCTTAAACGAATATTCAACCAAGAGAGACCCGATTCCACATTGAGGTCTGACCCTGGGATGCCATCTTCACATGG ACAATCCATCTTCTTCACTGTGGTGTTTGCTATTCTGTCAGTTGTGGAATGGCTAGGAGTGAATGGATTTTCACTGATCCTCGGTGCACTTATCCTGGCA TTTGGCACATATCTTACATGGTTGCGGGTCTCACAAGGACTTCATACAATCAGCCAAGTTGCGGCGGGTGCTGCTGTAGGATTCATTTTCTCCATTTTTT GGTTCTGGTCATGGGATGCATTTGTGCTTAAGGCATTTATTTCCTCTCTTTCGGTTCGCATAATTGTTATTATGGCAGCTGCTGCATCCTGCATGGGGTT TCTTGTATATGTTATCCGTTATTGGTTCAGAGATGAATGA
AA sequence Show only first row Show all	>Potri.007G021600.1 pacid=42765474 polypeptide=Potri.007G021600.1.p locus=Potri.007G021600 ID=Potri.007G021600.1.v4.1 annot-version=v4.1 MMSTPAILHKPTFKSLLFSPFKLNQAKPISFHRFPASKSDFFSSKNKALSKNMTELVRMSAFRGGNGSDSEESTGLFQQEAVVDGLNEFQSGLLADGLEA TLNRLSKWLVAALFGAVILWRHDAEAMWAVLGSIVNSILSVILKRIFNQERPDSTLRSDPGMPSSHGQSIFFTVVFAILSVVEWLGVNGFSLILGALILA FGTYLTWLRVSQGLHTISQVAAGAAVGFIFSIFWFWSWDAFVLKAFISSLSVRIIVIMAAAASCMGFLVYVIRYWFRDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66450			Phosphatidic acid phosphatase ...		Potri.007G021600 [exp]	0	1
AT1G28100			unknown protein		Potri.003G163800 [exp]	1.41	0.8990
AT1G30760			FAD-binding Berberine family p...		Potri.011G158600 [exp]	2.82	0.9397
AT1G65560			Zinc-binding dehydrogenase fam...		Potri.010G177700 [exp]	2.82	0.8835
AT3G19850			Phototropic-responsive NPH3 fa...		Potri.010G170900 [exp]	4.69	0.8738
AT3G05170			Phosphoglycerate mutase family...		Potri.003G131200 [exp]	5.65	0.8869
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.007G143600 [exp]	8.83	0.8707
AT5G39790			5'-AMP-activated protein kinas...		Potri.017G125400 [exp]	9.27	0.8503
AT5G23280	TCP	TCP7	TCP family transcription facto...		Potri.005G090300 [exp]	15.58	0.8173
					Potri.017G119700 [exp]	17.77	0.8406
AT5G67150			HXXXD-type acyl-transferase fa...		Potri.003G057001 [exp]	20.00	0.8753

Compare expression of checked genes

Potri.007G021600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.