Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47840 796 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 462 / 1e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 457 / 6e-150 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 453 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 452 / 9e-146 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 437 / 3e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 431 / 4e-140 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53360 429 / 5e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33680 426 / 2e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G32430 426 / 5e-139 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G018700 [exp] 503 / 2e-167 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 483 / 2e-160 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 483 / 9e-159 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 475 / 2e-154 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 465 / 2e-153 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 464 / 2e-152 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 456 / 5e-149 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 452 / 2e-148 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 454 / 6e-147 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019098 [exp] 915 / 0 AT3G47840 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 464 / 5e-153 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035164 [exp] 455 / 3e-149 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 451 / 1e-147 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 452 / 1e-146 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 452 / 1e-146 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 447 / 3e-146 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024936 [exp] 446 / 4e-146 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 453 / 7e-146 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001220 [exp] 448 / 8e-146 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.007G021700.1 pacid=42766172 polypeptide=Potri.007G021700.1.p locus=Potri.007G021700 ID=Potri.007G021700.1.v4.1 annot-version=v4.1 ATGCTTCTCTCAGTCCGGTCTCATGTTAGAAGACTATGTGCAGTATCAACCATGGTTTGCACAGATTACAGATACCTCGTCGTCTCTTGTCCAAAACCAG AAGCCTCACACCCGAAAACCCAGATCGAAAATCACTTAAACATGCAAGAAATCAACTTAGTTTTGAAGAATCTAGTGAAAACAGGTCATTTAAACAATGC ACGTCAACTGTTTGATAAAATGCTTCAAAGAGACGAAATTTCATGGACTACTATAATTTCTGGTTATGTCAATGGTATGAACACGACAGAAGCCTTGTCT TTGTTTTCTAAAATGTGGGTTGAGCCGGGTCTCCACATGGATCCCTTTATTCTTAGTCTTGCACTCAAAGCTTGTGGGCTTAATATGAGTGTGAGCTTTG GTGAGTCATTACATGGGTATTCGGTTAAAACTGATTTTGTTAACTCAGTTTTTGTAGGGAGTGCACTTGTGGATATGTACATGAAAATTGGTAGAGTTGA AGAAGGTTGTATTGTGTTTAAAGAGATGCCTTTGAGGAATGTAGTATCTTGGACTGCTATAATAGCTGGGCTTGTTCGTGCCGGTTATAATAAGGAGGCT TTGGCTTATTTCTCTGATATGTGGATACAAAAGGTAGGGTGTGATACCTACACGTTTTCTAGTGCGTTAAAGGCATGTGCTGATTCTGGTGCTTTGAATT ATGGGAGGGAGATTCATTGTCAAACATTGAAGAAAGGTTTTATTGCAGTGTCTTTTGTGGCTAACACTCTTGCTACAATGTATAATAAGTGTGGGAAATT GGATTATGGTTTGCGGTTGTTTGAAAGCATGACACAAAGGGATGTGGTTTCGTGGACGACGATTATAATGTCGAATGTGCAGATAGGTCAGGAGGAAAAT GCTGTTAAAGCATTTAGAAGAATGCGAGAAACAGATGTACGTCCTAATGAGTTCACTTTTGCAGCTGTCATTTCTGGTTGTGCTACTCTTGGAAGAATTG AATGGGGTGAACAATTGCATGCACATGTTATACGTCTAGGTCTAGTGGATTCTTTGTCTGTGGCCAATTCAATTATGGCCATGTATTCGAAATGCTGGCA GCTAGATTTGGCTTCAACTGTGTTTCAAGGGTTGTCCAGAAGAGATATTATTTCGTGGAGTACTATGATTTCAGGGTATGCTCAAGGGGGCTGTGGAGAA GAAGCATTTGATTATCTATCATGGATGAGAAGGGAAGGGCCAAGACCGAATGAGTTTGCTTTTGCAAGTGTGCTGAGTGTTTGTGGAAATATGGCAATTC TTGAGCAAGGGAAGCAACTCCATGCTCATGTCTTGTGCGTTGGATTAGAACAGAACACCATGGTACAAAGTGCTCTAATCAATATGTATTCAAAATGTGG GAGCATAAAGGAAGCTTCAAAAATCTTTGATGAGGCAGAATATAATAATATTGTATCATGGACAGCCATGATTAATGGATATGCTGAACATGGATACAGC CAGGAAGCCATTGATTTGTTCAAGAAGCTTCCCAAGGTTGGATTGAGGCCAGATTCTGTGACCTTTATTGCGGTTCTTGCTGCTTGCAGTCATGCTGGAC TGGTTGATCTTGGTTTCCACTACTTCAATTCTTTGAGTAAGGTCCACCAGATTTGTCCTTCAAAAGATCACTATGGATGCATGATTGATCTCCTATGCCG AGCTGGGCGATTAAATGATGCAGAGAGCATGATCCAAAGCATGCCATTTCAACGTGATGATGTTGTTTGGTCTACTCTTCTTAGAGCATGCAGAATCCAT GGTGATGTGGATTGTGGAAAACGTGCAGCGGAAAAAATTCTTCAATTAGATCCGAATTGTGCAGTGACTCACATTACCCTGGCTAACATGTATGCTGCCA AAGGAAAGTGGAAAGAAGCAGCAGAAGTGAGGAAGATGATGAAATCAAAGGGGGTAGTTAAGGAACCAGGATGGTCTTGGATTAAGTTTAAGGATCGAGT TTCTGCATTTGTGTCTGGTGATCGGTCTCATCCAGAGGGTGAATATATATATGATGTGTTGGATTTACTAGCATCTCAAGCAGAAATGCATATGCAGGAA ATGGATTTTCTTCTTAATGAAGTTCAGGAATCTCAAAGGTGA
AA sequence Show only first row Show all	>Potri.007G021700.1 pacid=42766172 polypeptide=Potri.007G021700.1.p locus=Potri.007G021700 ID=Potri.007G021700.1.v4.1 annot-version=v4.1 MLLSVRSHVRRLCAVSTMVCTDYRYLVVSCPKPEASHPKTQIENHLNMQEINLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALS LFSKMWVEPGLHMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGRVEEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEA LAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFIAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEEN AVKAFRRMRETDVRPNEFTFAAVISGCATLGRIEWGEQLHAHVIRLGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGE EAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYS QEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACRIH GDVDCGKRAAEKILQLDPNCAVTHITLANMYAAKGKWKEAAEVRKMMKSKGVVKEPGWSWIKFKDRVSAFVSGDRSHPEGEYIYDVLDLLASQAEMHMQE MDFLLNEVQESQR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47840			Tetratricopeptide repeat (TPR)...		Potri.007G021700 [exp]	0	1
AT1G74350			Intron maturase, type II famil...		Potri.005G063750 [exp]	2.00	0.9392
AT4G38440		IYO	MINIYO, unknown protein		Potri.009G139900 [exp]	2.44	0.9155
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.005G006400 [exp]	4.00	0.9164
AT1G64310			Tetratricopeptide repeat (TPR)...		Potri.015G082283 [exp]	4.12	0.8897
AT5G04050			RNA-directed DNA polymerase (r...		Potri.006G043650 [exp]	5.00	0.9076
AT1G45332			Translation elongation factor ...		Potri.001G123600 [exp]	6.70	0.8981
AT1G77010			Pentatricopeptide repeat (PPR)...		Potri.002G075200 [exp]	7.74	0.8694
AT3G61780		EMB1703	embryo defective 1703 (.1)		Potri.014G099100 [exp]	8.36	0.9025
AT3G09040			Pentatricopeptide repeat (PPR)...		Potri.005G137900 [exp]	8.48	0.8885
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.013G005400 [exp]	8.94	0.9012

Compare expression of checked genes

Potri.007G021700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.