Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34910 705 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G16630 149 / 1e-37 DEA(D/H)-box RNA helicase family protein (.1) AT5G60990 140 / 5e-36 DEA(D/H)-box RNA helicase family protein (.1) AT4G00660 139 / 4e-35 ATRH8 RNAhelicase-like 8 (.1.2) AT3G61240 134 / 1e-33 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT2G45810 134 / 2e-33 DEA(D/H)-box RNA helicase family protein (.1) AT3G01540 133 / 9e-33 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT3G06480 134 / 2e-32 DEAD box RNA helicase family protein (.1) AT3G22330 132 / 3e-32 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT2G47330 130 / 1e-31 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G241300 [exp] 153 / 4e-39 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G013900 [exp] 148 / 1e-38 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 147 / 3e-38 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G000100 [exp] 144 / 6e-36 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.007G068800 [exp] 138 / 4e-35 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.002G194600 [exp] 140 / 8e-35 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G000500 [exp] 138 / 6e-34 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.002G157500 [exp] 134 / 2e-33 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.017G071400 [exp] 134 / 9e-33 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015433 [exp] 804 / 0 AT4G34910 684 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10042754 [exp] 151 / 4e-38 AT1G16280 983 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10031182 [exp] 144 / 3e-37 AT5G60990 674 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10031761 [exp] 144 / 5e-37 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10006326 [exp] 145 / 6e-37 AT1G16280 673 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10029596 [exp] 143 / 5e-36 AT1G16280 674 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10017804 [exp] 138 / 7e-35 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10032135 [exp] 140 / 9e-35 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10001057 [exp] 140 / 1e-34 AT5G26742 919 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10030075 [exp] 138 / 3e-34 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.007G021800.1 pacid=42766381 polypeptide=Potri.007G021800.1.p locus=Potri.007G021800 ID=Potri.007G021800.1.v4.1 annot-version=v4.1 ATGGTGAAGGCCGATAAAACTAAAGAGAAAAAGGAAAAAGAGAGCGAACACAAACAAGAAATACAATTAAACGAGGAACCGGATGTAGTAGAAGAAGAAG ACGACGAAGCACAGAGCTTTGAAGAGTTAGGGTTAGACCCTAGGCTAATTCGTGCCCTAAACAAGAAAGAAATTAGCATTGCAGAGCCCACTCCAATTCA GCGAGCCGCTATTCCTCTAATACTTCAAGGGAAAGACGTGGTTGCACGAGCGAAAACAGGGTCAGGGAAGACATTAGCTTACTTGCTTCCTTTGCTTCAG AAGCTTCTCAGTACGGCTGATTCGAATCGAAAAAAGCTTTCACCTTCAGCATTTATTCTGGTGCCAAGTGGAGAGTTATGTCAACAGGTTTATAAGGAGG TTTCGTCGCTGATTGATTCCTGTAAAGCTCAATTGAAAGTTGTTCAGCTGACTAGCAACATGCCTGCTTCTGATTTGCGGAACGCGTTGGCTGGGCCGCC CGATATTTTGGTGTCTACTCCTTCTTGTGTAGCCAAGTCCTTGTCAGTTGGAGTACTAAAATCGGAATCTATTAATGACTCACTTGAAATTCTTGTTCTT GATGAGGCAGATCTCTTGTTGTCATTTGGCTATGAAGAAGATCTCAAAGCTCTTACTGCTCTTGTCCCAAGACGTTGTCAATGCCTTCTTATGTCTGCAA CGTCAAGTGCTGATGTCGACAAACTGAAGAAGCTCGTTCTGCATAATCCATATGTTTTGACCTTGCCAGAAGTTGAAGGTGTCAAGGATGAAGTTATCCC CAAAAATGTTCAGCAATTTTGGGTTTCATGTGGTGATCGTGACAAGTTAGTTCATATTCTTGCTCTTTTGAAGCTGGATCTGGTTCAGAAAAAAGTTTTG ATATTTACTAATGCCATTGATATGAGTTTCAGATTGAAATTGTTTTTAGAGAAGTTTGGAATAAAGTCTGCTGTTTTAAATGCTGAGTTGCCGCAGAATT CTCGTCTCCATATCCTAGAGGAATTCAATGCTGGGCTTTTTGATTATTTGATTGCAACGGATGACAGAGAAACAAAAGAAAAGGAAAAAGCCAACGAGGG AAGTCTTGCTGAGACAAGAAAATCAAAAAAGCATGCCAAGCAAAAGTTGGACTCAGAATTTGGAGTGGTGAGGGGAATTGACTTCAAAAATGTACACACG GTTATAAATTATGATATGCCTCTAAGTGCCACCGGATATGTACATCGAATTGGACGTACTGGAAGAGCTTACAGTACTGGTTCTTCTGTTTCTCTGGTTT CTCCAGATGAGATGGAAATTCTCGAAGAAATAAAATCCTTTTTAGGGGATGACGAAAACAATGAATCGAATGTTATTTCTCCATATCCTTTGCTCACAAA GAATGCAGTGGAGTCTTTACGGTACAGGGCCGAGGACACAGCAAAGAGTGTGACAAAAATTGCTGTCAGAGAAGCACGAGCTCAGGATTTGAGAAATGAA ATTCTTAACTCTGAAAAGTTGAAGGCTCATTTTGAAGTCAATCCAAGGGATTTAGATCTTCTAAAACATGACAAAGTTCTGAGCAAGAAGCCCCCTGCTC CACATCTTTCTGATGTGCCTGACTACTTATTGGATGCAACAACCAAGGAAGCAAGCAAGATGGTTAAGCTTGCGAGAGCTGCAATGGGAAACAACAACTC TGGTCGCCGCCAAGGACCAAAGAGAAACTTCAGAAAAAGCAAAGACCCCCTCAAGTCTTTCTCTGCTGAGGGGCCGAGGAGAGGTCGCAAAGGTGGAATG AAGAGAGAAGGAAAAGACGGGGATGATACTCATAAACACAAGAAGAAAAAAAATCTCTAA
AA sequence Show only first row Show all	>Potri.007G021800.1 pacid=42766381 polypeptide=Potri.007G021800.1.p locus=Potri.007G021800 ID=Potri.007G021800.1.v4.1 annot-version=v4.1 MVKADKTKEKKEKESEHKQEIQLNEEPDVVEEEDDEAQSFEELGLDPRLIRALNKKEISIAEPTPIQRAAIPLILQGKDVVARAKTGSGKTLAYLLPLLQ KLLSTADSNRKKLSPSAFILVPSGELCQQVYKEVSSLIDSCKAQLKVVQLTSNMPASDLRNALAGPPDILVSTPSCVAKSLSVGVLKSESINDSLEILVL DEADLLLSFGYEEDLKALTALVPRRCQCLLMSATSSADVDKLKKLVLHNPYVLTLPEVEGVKDEVIPKNVQQFWVSCGDRDKLVHILALLKLDLVQKKVL IFTNAIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDDRETKEKEKANEGSLAETRKSKKHAKQKLDSEFGVVRGIDFKNVHT VINYDMPLSATGYVHRIGRTGRAYSTGSSVSLVSPDEMEILEEIKSFLGDDENNESNVISPYPLLTKNAVESLRYRAEDTAKSVTKIAVREARAQDLRNE ILNSEKLKAHFEVNPRDLDLLKHDKVLSKKPPAPHLSDVPDYLLDATTKEASKMVKLARAAMGNNNSGRRQGPKRNFRKSKDPLKSFSAEGPRRGRKGGM KREGKDGDDTHKHKKKKNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34910			P-loop containing nucleoside t...		Potri.007G021800 [exp]	0	1
AT3G10530			Transducin/WD40 repeat-like su...		Potri.010G232500 [exp]	1.00	0.9088
AT5G48240			unknown protein		Potri.014G170500 [exp]	2.23	0.8587
AT5G14520			pescadillo-related (.1)		Potri.004G121400 [exp]	2.44	0.8978
AT4G26600			S-adenosyl-L-methionine-depend...		Potri.001G369600 [exp]	3.46	0.8740
AT3G07870			F-box and associated interacti...		Potri.011G137200 [exp]	4.69	0.8174
AT3G16810		APUM24	pumilio 24 (.1)		Potri.010G005600 [exp]	4.89	0.8679
AT3G02650			Tetratricopeptide repeat (TPR)...		Potri.001G361500 [exp]	5.65	0.8458
AT1G23280			MAK16 protein-related (.1)		Potri.015G083700 [exp]	5.83	0.7986
AT4G25730			FtsJ-like methyltransferase fa...		Potri.009G118400 [exp]	5.91	0.8505
AT5G15550			Transducin/WD40 repeat-like su...		Potri.017G093300 [exp]	6.48	0.8553

Compare expression of checked genes

Potri.007G021800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.