Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66470 535 / 0 RNA binding;GTP binding (.1) AT1G30960 97 / 1e-21 GTP-binding family protein (.1) AT3G12080 71 / 7e-13 EMB2738 embryo defective 2738, GTP-binding family protein (.1.2) AT1G78010 64 / 1e-10 tRNA modification GTPase, putative (.1) AT4G39520 50 / 2e-06 GTP-binding protein-related (.1) AT2G27200 46 / 3e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G08410 46 / 5e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G22870 44 / 0.0001 EMB2001 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G17470 43 / 0.0003 ATDRG1 developmentally regulated G-protein 1 (.1.2) AT1G72660 43 / 0.0003 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G160800 [exp] 91 / 9e-20 AT1G30960 491 / 4e-173 GTP-binding family protein (.1) Potri.002G092600 [exp] 56 / 2e-08 AT1G78010 688 / 0.0 tRNA modification GTPase, putative (.1) Potri.009G054200 [exp] 52 / 6e-07 AT3G12080 813 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Potri.007G080900 [exp] 49 / 3e-06 AT4G39520 647 / 0.0 GTP-binding protein-related (.1) Potri.009G017000 [exp] 46 / 5e-05 AT1G08410 755 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G170300 [exp] 42 / 0.0004 AT1G72660 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.003G063500 [exp] 42 / 0.0005 AT1G72660 678 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014289 [exp] 528 / 0 AT5G66470 587 / 0.0 RNA binding;GTP binding (.1) Lus10025995 [exp] 270 / 2e-83 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10023046 [exp] 86 / 7e-18 AT1G30960 499 / 5e-176 GTP-binding family protein (.1) Lus10032427 [exp] 86 / 8e-18 AT1G30960 489 / 1e-171 GTP-binding family protein (.1) Lus10027371 [exp] 66 / 2e-11 AT3G12080 874 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10002557 [exp] 66 / 4e-11 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10029578 [exp] 56 / 3e-08 AT1G78010 677 / 0.0 tRNA modification GTPase, putative (.1) Lus10006309 [exp] 56 / 5e-08 AT1G78010 669 / 0.0 tRNA modification GTPase, putative (.1) Lus10004103 [exp] 49 / 5e-06 AT1G08410 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013359 [exp] 49 / 6e-06 AT1G08410 745 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase CL0007 [poplar] [flax] KH PF07650 [poplar] [flax] KH_2 KH domain
Representative CDS sequence Show only first row Show all	>Potri.007G021900.1 pacid=42766107 polypeptide=Potri.007G021900.1.p locus=Potri.007G021900 ID=Potri.007G021900.1.v4.1 annot-version=v4.1 ATGGAGCTAGTAGCTTTAAACCTCTCTACAAAAATTCCAAGACAGAAACCAACCTTCCTCTCTACAACAACAAAGACTCTTCTCTTTCGCAATTATCATT ACCAGTTACGAAGAAGAGCAAGTAATCATTTTCGATTTCAAGCCAGGAATAAACAGCAGCAACAACTCTTGATTAGTCAAATAGATTCGGAAAGTGAGCT GGAATTCGACAGCGATGAAGATGAAGACGAGATGTCGTCTGGTTTGTTATCATTAAGCGTGAAACCAGACAGGAACACGGCTTTGCTTGATGATTACGAG ATTGAAGAACTTGCCTTTCATGATTCCTCCAATTCTAATCATCGTAGCGGGTACGTGGCAGTGGTAGGGAAACCGAATGTAGGAAAGAGCACGCTTTCGA ATCAAATGATAGGACAAAAGTTGTCGATTGTTACTGATAAACCTCAGACTACTAGACATCGCATTCTTGGTATTTGTTCCGCTCCAGATTACCAGATGAT ACTTTATGATACACCAGGTGTTATCGAGAAGAAAATGCACAAGTTGGATTCTATGATGATGAAGAATGTTAGGAGTGCTGCCATCAATGCTGACTGCGTG CTAGTTATTGTTGATGCTTGCAGAGCACCTGAAAAGATTGATGAAATGCTGGAAGAAGGTGTGGGAAACCTCAAAGACAATGTGCCCACTTTACTTGTAT TGAACAAGAAAGACTTGATCAAACCTGGTGAAATTGCAAAGAAACTTGAGTGGTATGAGAAATTTACAGGTGTTGATGAGGTCATACCTGTGAGTGCCAA ATTTGGTCAAGGAGTGGAAGATATCAAGGAATGGATACTTTCAAAACTTCCCATGGGGCCAGCTTATTATCCAAAGGACATTGTTAGTGAGCACCCAGAA AGATTCTTTGTAGCTGAAATTGTTAGAGAAAAGATCTTTATGCAATTCCGCAATGAGGTTCCTTATGCATGTCAGGTCAATGTGGTCGGCTATAAAGCTA GGCCAACAGCCAAAGATTTTATTCAAGTGGAGATTGTTGTGGAGAAGAACACACAGAAGATCATTATCATTGGAAAAGAAGGGAAGGCTTTGAAATTACT TGCCACAGCTGCTCGGCTGGACATTGAGGATTTCCTTCAGAAGAAAGTATATCTTGAGATAGAAGTGAAAGTAAAAGAGAATTGGCGGCAAGATGAAGGG CTTTTGAAGTACTATGGCTATGGAGGGCAAATTAGCGCATTATAG
AA sequence Show only first row Show all	>Potri.007G021900.1 pacid=42766107 polypeptide=Potri.007G021900.1.p locus=Potri.007G021900 ID=Potri.007G021900.1.v4.1 annot-version=v4.1 MELVALNLSTKIPRQKPTFLSTTTKTLLFRNYHYQLRRRASNHFRFQARNKQQQQLLISQIDSESELEFDSDEDEDEMSSGLLSLSVKPDRNTALLDDYE IEELAFHDSSNSNHRSGYVAVVGKPNVGKSTLSNQMIGQKLSIVTDKPQTTRHRILGICSAPDYQMILYDTPGVIEKKMHKLDSMMMKNVRSAAINADCV LVIVDACRAPEKIDEMLEEGVGNLKDNVPTLLVLNKKDLIKPGEIAKKLEWYEKFTGVDEVIPVSAKFGQGVEDIKEWILSKLPMGPAYYPKDIVSEHPE RFFVAEIVREKIFMQFRNEVPYACQVNVVGYKARPTAKDFIQVEIVVEKNTQKIIIIGKEGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEG LLKYYGYGGQISAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66470			RNA binding;GTP binding (.1)		Potri.007G021900 [exp]	0	1
AT1G52730			Transducin/WD40 repeat-like su...		Potri.001G174600 [exp]	1.00	0.9563
AT5G64380			Inositol monophosphatase famil...		Potri.017G042900 [exp]	9.53	0.9399
AT5G53080			Tetratricopeptide repeat (TPR)...		Potri.015G010800 [exp]	9.79	0.9499
AT4G38490			unknown protein		Potri.004G177800 [exp]	10.81	0.9293
AT3G24590		PLSP1	plastidic type i signal peptid...		Potri.018G081800 [exp]	10.95	0.9485
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Potri.011G106100 [exp]	12.96	0.9459
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.003G191000 [exp]	14.38	0.9493
AT3G04310			unknown protein		Potri.010G063300 [exp]	16.43	0.9443
AT3G53700		MEE40	maternal effect embryo arrest ...		Potri.004G013300 [exp]	18.57	0.9374
AT1G33780			Protein of unknown function (D...		Potri.019G073000 [exp]	19.39	0.9272

Compare expression of checked genes

Potri.007G021900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.