Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66460 573 / 0 MAN7, AtMAN7 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) AT3G10890 444 / 1e-154 Glycosyl hydrolase superfamily protein (.1) AT3G10900 432 / 5e-150 Glycosyl hydrolase superfamily protein (.1) AT5G01930 404 / 2e-138 MAN6, AtMAN6 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) AT1G02310 388 / 1e-132 MAN1 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) AT2G20680 356 / 6e-120 MAN2, AtMAN2 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) AT4G28320 353 / 1e-118 MAN5, AtMAN5 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) AT3G30540 316 / 1e-105 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G120500 [exp] 727 / 0 AT5G66460 588 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.005G229600 [exp] 530 / 0 AT5G66460 542 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.002G184500 [exp] 419 / 8e-145 AT5G66460 447 / 5e-156 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.016G138600 [exp] 412 / 3e-141 AT5G01930 683 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.006G109900 [exp] 410 / 7e-140 AT5G01930 659 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.013G130400 [exp] 367 / 4e-124 AT2G20680 661 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.006G009400 [exp] 358 / 4e-120 AT4G28320 430 / 2e-148 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) Potri.019G070200 [exp] 306 / 1e-101 AT3G10890 302 / 3e-100 Glycosyl hydrolase superfamily protein (.1) Potri.016G014801 [exp] 193 / 4e-59 AT2G20680 231 / 2e-74 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014288 [exp] 616 / 0 AT5G66460 583 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10025995 [exp] 616 / 0 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10030347 [exp] 433 / 1e-149 AT5G66460 422 / 2e-145 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10007900 [exp] 427 / 2e-147 AT5G66460 417 / 4e-143 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10014184 [exp] 402 / 8e-138 AT5G01930 674 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Lus10007210 [exp] 391 / 8e-134 AT5G66460 401 / 5e-138 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10007211 [exp] 395 / 4e-130 AT1G02310 405 / 4e-134 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) Lus10039833 [exp] 363 / 2e-122 AT2G20680 633 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10033687 [exp] 360 / 4e-121 AT2G20680 644 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10031650 [exp] 359 / 5e-121 AT2G20680 655 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00150 [poplar] [flax] Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence Show only first row Show all	>Potri.007G022000.3 pacid=42766660 polypeptide=Potri.007G022000.3.p locus=Potri.007G022000 ID=Potri.007G022000.3.v4.1 annot-version=v4.1 ATGAGGCATTTGACTTTGGTTCTTTTGCTAACCATTTTGATCCATCAAGGATGTCTTCATTTCCATGTTGAAGCAGGAGATGGTTTCATTAGAGCTAGAG GAGTGCAGTTCTTGTTGAATGGTAGCCCTTACTATGCAAATGGCTTCAATGCTTACTGGTTGATGTATACAGCTTCTGATCCATCTCAGAGATCAAAAGT TTCAGCTGCATTTCGTGAAGCAGCAAGCCATGGTCTCACTGTGGCCAGAACCTGGGCTTTTAGTGATGGTGGTTACAGTCCTCTACAGTACTCCCCTGGT TCCTACAATGAACAAATGTTTAAGGGGTTGGATTTTGTTATAGCTGAGGCTAGAAGATATGGGATCAAGCTCATTCTAAGCTTGGCTAACAACTATGATA GCTTTGGAGGGAAGAAACAGTATGTGAACTGGGCTAGAAGTCGAGGGCAGTATCTGACATCTGATGATGATTTCTTTAGACACCCTGTTGTCAAGGGTTA CTACAAGAACCATATCAAGACCGTTCTTTATAGATATAACAGCTTTACTGGAATTCATTACAAAGATGATCCAACAATCATGGCATGGGAGCTTATGAAT GAGCCTAGATGCACATCTGATCCTTCTGGAAGGACTATTCAGGCCTGGATAACAGAAATGGCTTCCTTTGTGAAGTCAATTGACAGGAATCACTTACTGG AAGCTGGTTTAGAAGGATTTTATGGACCTTCAACGCCACAGAGGAACAGACTCAATCCTGGTTTGAAGATAGGAACAGACTTCATAGCAAATAACCGCAT CCCCGGAATTGATTTTGCAACAGCCCATGCATATCCTGATCAATGGTTATCCAGCTCTAGTGATCAATCCCAACTTTCTTTTTTGAACAACTGGCTCGAC ACTCACATACAAGATGCGCAAAACATTCTTCGAAAACCAATACTCATTGCAGAATTTGGAAAATCTTGGAAAGACCCTGGTTTCAGCACATACCAGAGAG ACCTAGTGTTCAATACCGTGTACTACAAGATATATTCATCAGCTAAAAGAGGAGGAGCAGCTGCAGGAGGCCTGTTTTGGCAACTTCTAACTGAAGGAAT GGGCAATTTTCGCGACGGGTATGAAATAGTCCTGGGGCAACCTTCCTCAACTGCAAATGTTATAGCTCAACAGGCACACAAGCTTAATCAAATTCGAAAG ATATTTCTGAGAATGAGAAATGTGGAGAGGTGGAAGAGAGCAAGGGCCGCCAGGGCTAGGAGGGGTCGTTGGCAGGGTGGAAAAAAAGGCAAGCGTATTG GAAACTGA
AA sequence Show only first row Show all	>Potri.007G022000.3 pacid=42766660 polypeptide=Potri.007G022000.3.p locus=Potri.007G022000 ID=Potri.007G022000.3.v4.1 annot-version=v4.1 MRHLTLVLLLTILIHQGCLHFHVEAGDGFIRARGVQFLLNGSPYYANGFNAYWLMYTASDPSQRSKVSAAFREAASHGLTVARTWAFSDGGYSPLQYSPG SYNEQMFKGLDFVIAEARRYGIKLILSLANNYDSFGGKKQYVNWARSRGQYLTSDDDFFRHPVVKGYYKNHIKTVLYRYNSFTGIHYKDDPTIMAWELMN EPRCTSDPSGRTIQAWITEMASFVKSIDRNHLLEAGLEGFYGPSTPQRNRLNPGLKIGTDFIANNRIPGIDFATAHAYPDQWLSSSSDQSQLSFLNNWLD THIQDAQNILRKPILIAEFGKSWKDPGFSTYQRDLVFNTVYYKIYSSAKRGGAAAGGLFWQLLTEGMGNFRDGYEIVLGQPSSTANVIAQQAHKLNQIRK IFLRMRNVERWKRARAARARRGRWQGGKKGKRIGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Potri.007G022000 [exp]	0	1
AT1G48100			Pectin lyase-like superfamily ...		Potri.010G152000 [exp]	3.00	0.7086
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Potri.018G097000 [exp]	12.32	0.6974
AT3G61490			Pectin lyase-like superfamily ...		Potri.002G162400 [exp]	22.36	0.6262
AT4G35720			Arabidopsis protein of unknown...		Potri.005G103800 [exp]	23.06	0.6264
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.011G071800 [exp]	32.58	0.6494
AT1G54990		RGR1, AXR4	REDUCED ROOT GRAVITROPISM 1, R...		Potri.013G021500 [exp]	34.59	0.5793
AT5G50570	SBP	SPL13, SPL13A	SQUAMOSA PROMOTER-BINDING PROT...		Potri.015G098900 [exp]	47.62	0.6015
AT1G22030			unknown protein		Potri.005G170700 [exp]	51.98	0.6415
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Potri.010G167200 [exp]	54.49	0.6289	EXPA1.1,PtEXPA3
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Potri.005G229600 [exp]	80.53	0.5486

Compare expression of checked genes

Potri.007G022000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.