Plant FIBer expression Database

Potri.007G022100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G50910 240 / 7e-74 unknown protein
AT5G66480 191 / 2e-55 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G120600
[exp]
543 / 0 AT3G50910 230 / 6e-70 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028325
[exp]
325 / 1e-106 AT3G50910 305 / 3e-99 unknown protein
Lus10041772
[exp]
324 / 3e-106 AT3G50910 313 / 3e-102 unknown protein
Lus10025996
[exp]
317 / 3e-103 AT3G50910 302 / 3e-98 unknown protein
Lus10014290
[exp]
313 / 8e-102 AT3G50910 313 / 2e-102 unknown protein
PFAM info
Representative CDS sequence
>Potri.007G022100.3 pacid=42766726 polypeptide=Potri.007G022100.3.p locus=Potri.007G022100 ID=Potri.007G022100.3.v4.1 annot-version=v4.1
ATGCCACATTTTACTGCATTAGCTTTGGATAGGTTGTTAGAACCTGGAGCATCGAAATCCGTCGACATGCCAGTTCCTAGTTCAAACAACAAGTACCCAG
TTCCGAAGCCGAAGCCGAAGCCTCCTCCACCAGAATTGAAGCCACCTTTACCCAATTCAAACCTGGAGAGGAGGAATAGTACATCGGTGATAGAGAGGAA
AGGTAATCGTCCTCAAATATCGCCTGGACTGTATGCGACTCCTGAATCGACCCCACTTCCTGATTCACCAACTTCGTTTCCTCCTTCGCCTTATATTATT
AATCACAAGAGACGCGGGCCACGCCTTTCGAAGAGCTTTTCGGACGATGATGTAGCTTCTAGGAAGAAGAAATTGGAGAAACTTGAGGTGAACGGGAATG
TGAATAATGGGGAAAATAAGGTTGTTGATTCGAGTAATGGGCATTCAGTTACTTTTTTCATCCCTAGTTCTGTTGAAGGTGAGCTCGTGAATGATGTAAA
CGGGTGTCCTGGTAAAGAGGATGTTGTGAATGGTGTCCGTGATTGTCCTATCGAAGTGGGCCGTGTTAATGGAAGCCATGGTGGTGAAAGAGGGAGCAGT
AGTGTGCAACTTGGGACTGGTGATACGAGGAAGGACTTGTCCTTGGAAAAGGATATGTTGAAGCCGATTGAGCAGAATGTGGAAAGAAATGGGGACAGTG
ATGATTTCTTTGATCCACAAGACTCCATGAGTTATACTAGTAACACTGATGTTGAGGACACCACTGCAGTTGAGAGTTCTATGAAGCTTACTGCAGCTTT
GCCAGTAGGAGAGTTTTATGATGCTTGGGAAGAGCTATCCTCTGAGAGTGGGCAACAGCCTTCTCCTTCTCCTCACCACAATGGAGCTGAATTGCGTGAA
ATGAGATTGAGTTTGTTGATGGAGATAGAGAAGCGGAAGCAAGCAGAGGAGGCTATGGATAATATGCAAAGCCAGTGGCAGAGGATCAGACAAGAATTAG
CTCTGGTAGGGCTTTCCCTCCCTGCTTGTCCTGTTGATGTGCCAGAGAGTGATCAGCCATCAGATGTGAATCCTGTAGAGGAGATTTGCCAGCAGATCTA
TCTTGCTCGGTTTGTATCAGAATCTATAGGAAGGGGTATTGCAAAAGCTGAGGCTGAGATAGAGATGGAAGCTCAGGTTGAAGCAAAGAACTTTGAAATT
GCTCGATTGTTGGACCGACTTCATTATTACGAGGCAGTGAATCGAGAACTGTCTCAGTGGAACCAAGAAGTTATAGAAACGGCGCGCCGAAACAGGCAGA
TAAGGAAAAGGAGGCAGAAGTGGGTTTGGGGCTCGATTGCTGCTGCAATCACCCTTGGCATGACAACCTTGGCATGGTCATATCTCCCAGCAATGAGTGG
ATCATCTTCTTCCAGTGATTCTCATGCTCCAGAGCATGATGATACAGCTAATTGA
AA sequence
>Potri.007G022100.3 pacid=42766726 polypeptide=Potri.007G022100.3.p locus=Potri.007G022100 ID=Potri.007G022100.3.v4.1 annot-version=v4.1
MPHFTALALDRLLEPGASKSVDMPVPSSNNKYPVPKPKPKPPPPELKPPLPNSNLERRNSTSVIERKGNRPQISPGLYATPESTPLPDSPTSFPPSPYII
NHKRRGPRLSKSFSDDDVASRKKKLEKLEVNGNVNNGENKVVDSSNGHSVTFFIPSSVEGELVNDVNGCPGKEDVVNGVRDCPIEVGRVNGSHGGERGSS
SVQLGTGDTRKDLSLEKDMLKPIEQNVERNGDSDDFFDPQDSMSYTSNTDVEDTTAVESSMKLTAALPVGEFYDAWEELSSESGQQPSPSPHHNGAELRE
MRLSLLMEIEKRKQAEEAMDNMQSQWQRIRQELALVGLSLPACPVDVPESDQPSDVNPVEEICQQIYLARFVSESIGRGIAKAEAEIEMEAQVEAKNFEI
ARLLDRLHYYEAVNRELSQWNQEVIETARRNRQIRKRRQKWVWGSIAAAITLGMTTLAWSYLPAMSGSSSSSDSHAPEHDDTAN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G50910 unknown protein Potri.007G022100
[exp]
0 1
Potri.018G105200
[exp]
5.00 0.8343
AT5G43210 Excinuclease ABC, C subunit, N... Potri.001G260600
[exp]
5.29 0.8758
AT5G07610 F-box family protein (.1) Potri.013G067800
[exp]
6.48 0.8570
AT5G55340 MBOAT (membrane bound O-acyl t... Potri.008G145700
[exp]
7.74 0.8594
AT4G30210 AR2, ATR2 P450 reductase 2 (.1.2) Potri.018G092100
[exp]
10.48 0.8089 PSC450.1
AT2G42040 unknown protein Potri.016G058100
[exp]
11.61 0.8319
AT5G59050 unknown protein Potri.009G038600
[exp]
11.87 0.8606
AT2G39760 ATBPM3 BTB/POZ/MATH-domains containin... Potri.010G199200
[exp]
13.67 0.8383
AT1G46768 AP2_ERF RAP2.1 related to AP2 1 (.1) Potri.014G025200
[exp]
13.85 0.8605 DREB36,DREB1.2
AT5G57660 CO COL5, ATCOL5 CONSTANS-like 5 (.1) Potri.018G096084
[exp]
14.07 0.8251

Potri.007G022100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.