Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50900 84 / 2e-22 unknown protein AT2G18210 73 / 6e-18 unknown protein AT4G36500 69 / 2e-16 unknown protein AT5G66490 57 / 1e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G022200 [exp] 121 / 8e-37 AT2G18210 56 / 8e-11 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028324 [exp] 103 / 7e-30 AT2G18210 88 / 1e-23 unknown protein Lus10025998 [exp] 100 / 2e-28 AT2G18210 72 / 3e-17 unknown protein Lus10025997 [exp] 96 / 6e-27 AT4G36500 73 / 1e-17 unknown protein Lus10041771 [exp] 96 / 6e-27 AT2G18210 88 / 1e-23 unknown protein Lus10014291 [exp] 92 / 2e-25 AT4G36500 71 / 7e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G022300.1 pacid=42766685 polypeptide=Potri.007G022300.1.p locus=Potri.007G022300 ID=Potri.007G022300.1.v4.1 annot-version=v4.1 ATGTTGAGAGCATTGAGCACATGCAGGAACCATGGGGGTTATGAAAGGTTAGTTGACGAGCCTGTTAACATAAGTCTATTGGATGGGAAGTTGAAGAGGG CTAAAAGCGTACCAGCTAGTGTTTTTGGCTCATCAAAGTCACGAAAGTTGGGACCAGAACTGGCCCTTCAAAATATTTTTCCGGCGAAGCCTAGCAGCAG AAAGGTTAGCAAGAGTCATCCACTGTTTAGTCTCTTCAATAATCGTAGAAAGAAGAAACCTACGGCTAGGCCAGAATTTGCTAGGTACTTGCAGTATGTG AAGGAAGGAGGGATATGGCTCTGA
AA sequence Show only first row Show all	>Potri.007G022300.1 pacid=42766685 polypeptide=Potri.007G022300.1.p locus=Potri.007G022300 ID=Potri.007G022300.1.v4.1 annot-version=v4.1 MLRALSTCRNHGGYERLVDEPVNISLLDGKLKRAKSVPASVFGSSKSRKLGPELALQNIFPAKPSSRKVSKSHPLFSLFNNRRKKKPTARPEFARYLQYV KEGGIWL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50900			unknown protein		Potri.007G022300 [exp]	0	1
AT2G26190			calmodulin-binding family prot...		Potri.006G147900 [exp]	1.00	0.9381
AT3G52450		PUB22	plant U-box 22 (.1)		Potri.016G069400 [exp]	3.16	0.8922
AT1G74360			Leucine-rich repeat protein ki...		Potri.012G067600 [exp]	4.24	0.8784
AT2G14960		GH3.1	Auxin-responsive GH3 family pr...		Potri.001G298300 [exp]	6.32	0.9271	3
AT2G26530		AR781	Protein of unknown function (D...		Potri.014G034900 [exp]	7.34	0.9257	AR781.2
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.010G188000 [exp]	7.41	0.9131
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.001G099001 [exp]	7.48	0.9012
AT5G47710			Calcium-dependent lipid-bindin...		Potri.016G005300 [exp]	8.71	0.9180
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Potri.011G057000 [exp]	8.83	0.8893
AT1G28190			unknown protein		Potri.003G160000 [exp]	9.59	0.8743

Compare expression of checked genes

Potri.007G022300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.