Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66500 581 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 334 / 1e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 304 / 7e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 306 / 2e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 301 / 8e-94 MEF22 mitochondrial editing factor 22 (.1) AT5G27110 297 / 1e-92 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 301 / 2e-92 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G13770 292 / 3e-91 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 301 / 6e-91 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G50270 290 / 8e-91 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059400 [exp] 328 / 1e-102 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G104700 [exp] 322 / 9e-102 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G152000 [exp] 312 / 9e-98 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.002G155100 [exp] 308 / 8e-96 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 308 / 2e-95 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G178200 [exp] 306 / 5e-95 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 306 / 1e-94 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G007800 [exp] 306 / 1e-94 AT3G22150 1088 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G108000 [exp] 301 / 1e-94 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041770 [exp] 663 / 0 AT5G66500 510 / 6e-177 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 335 / 3e-107 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008136 [exp] 308 / 6e-97 AT5G39350 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038839 [exp] 303 / 1e-95 AT5G13230 715 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030124 [exp] 300 / 1e-95 AT3G15130 613 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013176 [exp] 303 / 2e-95 AT5G39350 621 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 306 / 7e-95 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018492 [exp] 300 / 2e-94 AT4G18750 385 / 2e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 305 / 5e-94 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024876 [exp] 304 / 1e-93 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.007G022500.1 pacid=42766394 polypeptide=Potri.007G022450.1.p locus=Potri.007G022500 ID=Potri.007G022500.1.v4.1 annot-version=v4.1 ATGCCTCCTAAACCCCGGTCGCTGTCCATTTGTTACCGTTTCTTTTGTTACCCTAACTTCTCCGCCAGAACACCCATTAACGGTTATTCGGAAGCAAACG CAACCATCTACCTTCAGAACCGTTATGTTCATACCGGCAACCTGTTCGATGAATTGCCTCACAGAGACCTCTACTCCCTCAACTCTCAACTCGCCTCCTA TTCTCGCGATGGAAACTTTCTTGCCACATGGGATCTCTTCTCTCGCATTCATTCTGCATTTCTTGACCTTGATGCTTACACCTTTACGCCGGTTCTCCGT GCATGCTCGGCTTTGCCTGACACGAAGTGTGGCAGACAAGTCCATGCTTTAATGATTAAGACAGGCACGGATTTGGGAACTATAACAAAAACTGCAGTAA TGGATATGTATTCAAAATATGGGTGCTTGGGTGAGTCAGTTAAGGTCTTTGAAGAAATGGAATTCCGGGACGTTGTGACTTGGAATGCTTTGGTTTCGAG TTTTCTTAGGCATGGTCTTGCTAAGGAAGCGCTTGGTGTTTTTAGAGCAATGAGGAGGGAGAGTGTGGAGATAACTGAGTTCACACTGTGTTCTGTGCTT AAGGCTTGTGCCTTTATTAAGGCTTTTCGACAAGGTAAGCAAGTTCATGGCTTGGTCATTGTGATGGGTCGAGATTTGGTGGTTTTAGGCACTGCTCTTA TTGATTTTTACTCTAATGTGGGGTATATTAGCGAAGCTATGAAAGTTTTTTCTTGTTTGAGTTGCAGGAAAGATGAGGTTTTGCGCAATTCTTTGATTGC TGGGTGTGTCAAGCATAGGAGATACGAGGAGGCGTTTTTAGTGATGAGTACTATGAGACCAAATGCGGTTGCACTTACTACTGCTCTTGCTGCTTGCTCT GATAATTCAGATTTGTGGATTGGGATGCAGATTCATTGCGTGGCACTGCGATTTGGATTTATTGCAAATACTCAAGTGTGCAATGTGTTATTAGATATGT ATGCAAAATGTGGGAGAATTTTGAAATCCAGATCAATATTTGACGGGATCTGTCATAAAACTGTTGTTTCTTGGACTAGCATGATAGATGCATATGGAAG GCATGGTCATGGGGATGAAGCACTCAAGCTGTTTAAAGAGATGGGGCAAGAAGGAAGTAGAGTCTTGCCAAATTCTTTGACACTTCTTGCTGTTCTATCA GCATGTGGGCATTCAGGACTAGTCAAAGAAGGCCAAGAACTTTTTAATTCTGCAAGGGAGAAATATGGTCTGGATCCAAGTCAGGAGCATTATTCCTGCG TCATAGATATCTTAGGCCGTGCTGGCCAAATAGAAGATGCATGGTGCCTTTTTCATGATATGGTTAAAAAGGGTATAGGGCCTACAGCTGCAGTGTGGGC AGCACTAGTGAATGCTTGTTGTCTTAACCTGGATGTATCTAGGGGTGAGTTTGCTGCAAAGCATCTCTTGGAATTAGAACCAAATAATGATGGCATTCAT GTGCTGGTTTCAAAGTTCTATGCATCCATTGATAGGTGGGATGTTGTGGAGAGCTTGAGAAACAATATGAGGAAGAAAGGACTGACTAAAGTATTAGGTA GTAGCTGGTTAGATGTTGCATGA
AA sequence Show only first row Show all	>Potri.007G022500.1 pacid=42766394 polypeptide=Potri.007G022450.1.p locus=Potri.007G022500 ID=Potri.007G022500.1.v4.1 annot-version=v4.1 MPPKPRSLSICYRFFCYPNFSARTPINGYSEANATIYLQNRYVHTGNLFDELPHRDLYSLNSQLASYSRDGNFLATWDLFSRIHSAFLDLDAYTFTPVLR ACSALPDTKCGRQVHALMIKTGTDLGTITKTAVMDMYSKYGCLGESVKVFEEMEFRDVVTWNALVSSFLRHGLAKEALGVFRAMRRESVEITEFTLCSVL KACAFIKAFRQGKQVHGLVIVMGRDLVVLGTALIDFYSNVGYISEAMKVFSCLSCRKDEVLRNSLIAGCVKHRRYEEAFLVMSTMRPNAVALTTALAACS DNSDLWIGMQIHCVALRFGFIANTQVCNVLLDMYAKCGRILKSRSIFDGICHKTVVSWTSMIDAYGRHGHGDEALKLFKEMGQEGSRVLPNSLTLLAVLS ACGHSGLVKEGQELFNSAREKYGLDPSQEHYSCVIDILGRAGQIEDAWCLFHDMVKKGIGPTAAVWAALVNACCLNLDVSRGEFAAKHLLELEPNNDGIH VLVSKFYASIDRWDVVESLRNNMRKKGLTKVLGSSWLDVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66500			Tetratricopeptide repeat (TPR)...		Potri.007G022500 [exp]	0	1
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.001G100600 [exp]	5.47	0.8807
AT3G23330			Tetratricopeptide repeat (TPR)...		Potri.001G186500 [exp]	7.21	0.8750
AT1G25360			Pentatricopeptide repeat (PPR)...		Potri.002G027800 [exp]	10.95	0.8670
AT1G51965		ABO5	ABA Overly-Sensitive 5 (.1)		Potri.013G105000 [exp]	13.41	0.8308
AT5G11470			bromo-adjacent homology (BAH) ...		Potri.018G036500 [exp]	13.52	0.8071
AT2G39620			Pentatricopeptide repeat (PPR)...		Potri.008G052200 [exp]	13.60	0.8748
AT4G08210			Pentatricopeptide repeat (PPR-...		Potri.002G087400 [exp]	19.23	0.8554
AT3G26540			Tetratricopeptide repeat (TPR)...		Potri.002G075300 [exp]	21.35	0.8444
AT1G11900			Tetratricopeptide repeat (TPR)...		Potri.001G273100 [exp]	22.04	0.8464
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Potri.010G086900 [exp]	22.27	0.8581

Compare expression of checked genes

Potri.007G022500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.