Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01050 353 / 1e-125 ATPPA1 pyrophosphorylase 1 (.1) AT3G53620 353 / 4e-125 ATPPA4 pyrophosphorylase 4 (.1) AT2G18230 352 / 5e-125 ATPPA2 pyrophosphorylase 2 (.1) AT2G46860 347 / 5e-123 ATPPA3 pyrophosphorylase 3 (.1) AT4G01480 341 / 1e-120 ATPPA5 pyrophosphorylase 5 (.1) AT5G09650 75 / 6e-16 ATPPA6 pyrophosphorylase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G107100 [exp] 355 / 5e-126 AT1G01050 404 / 1e-145 pyrophosphorylase 1 (.1) Potri.002G181300 [exp] 354 / 1e-125 AT1G01050 399 / 7e-144 pyrophosphorylase 1 (.1) Potri.006G082500 [exp] 348 / 2e-123 AT3G53620 392 / 8e-141 pyrophosphorylase 4 (.1) Potri.009G081200 [exp] 79 / 3e-17 AT5G09650 450 / 4e-161 pyrophosphorylase 6 (.1) Potri.001G286900 [exp] 76 / 5e-16 AT5G09650 451 / 2e-161 pyrophosphorylase 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041767 [exp] 383 / 3e-137 AT2G46860 359 / 5e-128 pyrophosphorylase 3 (.1) Lus10028320 [exp] 380 / 7e-136 AT2G46860 360 / 4e-128 pyrophosphorylase 3 (.1) Lus10025999 [exp] 380 / 8e-136 AT1G01050 357 / 5e-127 pyrophosphorylase 1 (.1) Lus10014292 [exp] 379 / 2e-135 AT1G01050 356 / 1e-126 pyrophosphorylase 1 (.1) Lus10024422 [exp] 353 / 2e-125 AT3G53620 385 / 3e-138 pyrophosphorylase 4 (.1) Lus10025311 [exp] 355 / 4e-124 AT3G53620 387 / 1e-136 pyrophosphorylase 4 (.1) Lus10005139 [exp] 340 / 6e-120 AT1G01050 391 / 1e-140 pyrophosphorylase 1 (.1) Lus10030179 [exp] 340 / 6e-120 AT1G01050 391 / 1e-140 pyrophosphorylase 1 (.1) Lus10037239 [exp] 82 / 2e-18 AT5G09650 446 / 1e-159 pyrophosphorylase 6 (.1) Lus10035653 [exp] 81 / 5e-18 AT5G09650 446 / 2e-159 pyrophosphorylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00719 [poplar] [flax] Pyrophosphatase Inorganic pyrophosphatase
Representative CDS sequence Show only first row Show all	>Potri.007G022700.8 pacid=42766299 polypeptide=Potri.007G022700.8.p locus=Potri.007G022700 ID=Potri.007G022700.8.v4.1 annot-version=v4.1 ATGTCTCTCAACACTGAAAACATGGCTAACAACGATGGGGAAGTGACCGGGAAACGTGCAGGATGGCCTCCTGTTCTCAATGAAAGGATTCTTTCTTCAA TGTCCCGGAGATCTATTGCTGCGCATCCCTGGCATGACTTGGAGATTGGACCTGGTGCTCCAAGTGTTTTCAATTGTGTGATTGAGATCAGCAAGGGCAG CAAGGTTAAGTATGAGCTTGACAAGGCAAGTGGCCTTATAAAGGTTGATCGTGTTCTCTACTCATCAGTTGTTTACCCACACAACTATGGTTTCATCCCA CGAACTCTCTGTGAGGACAGTGATCCTATGGATGTTCTGGTACTGATGCAGGAGCCTGTGCTACCCGGTTCTTTCCTTCGTGCTCGTGCAATTGGTTTAA TGCCAATGATTGATCAGGGTGAAAAGGATGACAAAATCATTGCAGTGTGTGCTGATGACCCTGAGTTCGTCCATTACAAGGACATCAAGGAACTTCCTCC GCATCGCCTGGCTGAAATTCGCCGCTTTTTCGAGGACTATAAGAAGAATGAGAACAAGAAAGTTGATGTTGAAGACTTCTTGCCAGCTGCCTCTGCAATT GATGCCATCAAGTATTCCATGGATCTGTATGCATCTTACATTGTTGAAGGTCTGAGGCAGTGA
AA sequence Show only first row Show all	>Potri.007G022700.8 pacid=42766299 polypeptide=Potri.007G022700.8.p locus=Potri.007G022700 ID=Potri.007G022700.8.v4.1 annot-version=v4.1 MSLNTENMANNDGEVTGKRAGWPPVLNERILSSMSRRSIAAHPWHDLEIGPGAPSVFNCVIEISKGSKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIP RTLCEDSDPMDVLVLMQEPVLPGSFLRARAIGLMPMIDQGEKDDKIIAVCADDPEFVHYKDIKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAASAI DAIKYSMDLYASYIVEGLRQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Potri.007G022700 [exp]	0	1
AT4G32590			2Fe-2S ferredoxin-like superfa...		Potri.006G247300 [exp]	7.74	0.8629
AT5G63520			unknown protein		Potri.012G100500 [exp]	8.48	0.8121
AT5G11910			alpha/beta-Hydrolases superfam...		Potri.006G227900 [exp]	10.00	0.7952
AT5G09680		RLF	reduced lateral root formation...		Potri.001G263800 [exp]	10.24	0.7789
AT4G09830			Uncharacterised conserved prot...		Potri.001G003400 [exp]	11.31	0.8178
AT1G65560			Zinc-binding dehydrogenase fam...		Potri.010G177700 [exp]	12.24	0.8111
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Potri.007G131700 [exp]	12.72	0.8211
AT3G23490		CYN	cyanase (.1)		Potri.010G068200 [exp]	17.20	0.7784	Pt-CYN.1
AT2G37660			NAD(P)-binding Rossmann-fold s...		Potri.006G086800 [exp]	19.33	0.8408
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Potri.014G130700 [exp]	19.79	0.7444	GRP2.2

Compare expression of checked genes

Potri.007G022700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.