Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27740 261 / 3e-82 RFC3, EMB251, EMB161, EMB2775 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) AT1G21690 67 / 8e-12 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) AT1G77470 53 / 3e-07 EMB2810, RFC5, RFC3 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) AT1G63160 51 / 9e-07 EMB2811, RFC2 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G120901 [exp] 935 / 0 AT5G27740 240 / 8e-72 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.019G040000 [exp] 239 / 9e-74 AT5G27740 621 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.003G093400 [exp] 157 / 5e-42 AT5G27740 182 / 2e-53 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.002G081200 [exp] 70 / 1e-12 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Potri.003G123200 [exp] 58 / 8e-09 AT1G63160 587 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041764 [exp] 633 / 0 AT5G27740 269 / 3e-84 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10028316 [exp] 610 / 0 AT5G27740 271 / 6e-86 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10019391 [exp] 247 / 5e-77 AT5G27740 643 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10043248 [exp] 207 / 1e-60 AT5G27740 561 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10023809 [exp] 132 / 2e-35 AT5G27740 138 / 2e-39 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10025689 [exp] 70 / 1e-12 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10018144 [exp] 69 / 4e-12 AT1G77470 564 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10028543 [exp] 62 / 4e-10 AT1G21690 563 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Lus10023810 [exp] 57 / 9e-09 AT5G27740 72 / 1e-14 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10024504 [exp] 54 / 2e-07 AT1G63160 615 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0604 [poplar] [flax] post-AAA PF08542 [poplar] [flax] Rep_fac_C Replication factor C C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.007G022900.3 pacid=42764907 polypeptide=Potri.007G022900.3.p locus=Potri.007G022900 ID=Potri.007G022900.3.v4.1 annot-version=v4.1 ATGAGCCGTAGACAAAGGGAAAGAGAAGTTTCTCATGCAAAAGCAGCTTCTGTTGGTGAACTGAATGAGATTGTTGCTAACATTAAGCTTTCTAAAGATT CTATGCTTGATGTTCCAAATTTTGAAAGCACGGAATCTATTTCTCCTGGTGATATCTTCTTTTCTGTTGACCAGACAGCTTTGGGGATGCAGAAGAATGG CATATTAAAGGACAACAATGTGACCAATTTGTACCTGAAACCCGCATCGTTTCCTCACATGGATTCTGTTCTTCTTCAGCGTAATAAAGTAAATGGTAAT ATCGATCATAACTCACAAAGAACTTCGACAACAAGTTCTGGTTCACGAATGACCATGACGTCAGCCTCTGCTGCAAGTAGGCAGAGCAGTAGCAAACTTA GCAGTGACAGTAGCAAGATAAGTGATGCAAGTGGTAGAACAAGTGGGAGCTTGAAGAAGTTCACCGAAAACCGGAAGAAAAAACAAACAGAAGCTTGGTT TTCTTGTTTGAAGAAGGGACCTTGCAAGACCTCAAAATCACCTGGAAAAAAACGTTGTGATGAAACATCATTCATCGAGAAGGCATTTGTGGTTGAAAGC TTGAGACAGTTTTGGGCTGATAAGCATCAACCCGGTTCATTGAATGGATTTACATGCCACAAACATGAAGCTCAAATTCTCGGTCAACTTGTATCACATG ACAGCATTCCTCACATTTTGCTGAAGGGACCATCCGGTTCTGGCAAAAAAGCGCTAGCAATGGCTCTGATAGGCGATATATTTGGTGATGCATGTTGGCA TAAAACACATGATTTGAGATATTTCCAGGAACAAAGGGGAGCAGCACAGGTAGTGGTTCCAATAACATCCAGTGCTCATCATGCAGAGATCAATGTAAAT TTGGAGCCAAATGCTAAAACTGCATTAATGGGTTTAGTGAAGGAAATAAGGAACACTTATGCTATTACCCCTGATTTTAGCAACGTCAATTTTAAGCCAG ATTATAAAGTATTGGTTCTTTATGAGGTTGACAAAGCACCAGAGAACATCCAGCCCTTGATGAAATGGATCATGGACTGTTACACAGATGCTTGTAAACT CATTCTCTGCTGTGAAGATGATTCAGACATTCTGGAAACCGTAAAAAATCGGTGCAAAGTTTTAAAAGTTGATGCTCCTGTGACCCATGAGATCATGGAG GTTCTCATTCAGATAGCAAGGAAAGAAGAGTTTGATCTACCGATGAACTTTGCAGCTAAGATCGCTGCCAAATCGAAGCAGAACCTGAGAAAAGCAATCA TGGCTCTTGAAGCCTGCAAAGCACACAACTATCCTTTTTCCGATGATCAGCCAATTCCATTTGGATGGGAAGAGGTTTTGGTAGAACTTGCAACAGAAAT CCTGATTGATCCATCACCTAATAAATTGTTTTCTGCACGGGGAAAGTTGAAAAGGCTTCTTGTGGATTTTGTTAACCCCAAACTGATTCTCCTGAAATTG GTGGAGCAATTCCTGAAGGGAGTAGAGGCTAATTCAAGAAGGGAGCTTTATTATTGGCATGCTTATTATGATAAGAGGCTCCCAACAGGAACAACTGCTC TACTCAAATTAGAAGAATTTGTGGCCAAATTCATGAGCATGTACAGGAAGAGTTCTGGCACTCGTCAGTATGTATAG
AA sequence Show only first row Show all	>Potri.007G022900.3 pacid=42764907 polypeptide=Potri.007G022900.3.p locus=Potri.007G022900 ID=Potri.007G022900.3.v4.1 annot-version=v4.1 MSRRQREREVSHAKAASVGELNEIVANIKLSKDSMLDVPNFESTESISPGDIFFSVDQTALGMQKNGILKDNNVTNLYLKPASFPHMDSVLLQRNKVNGN IDHNSQRTSTTSSGSRMTMTSASAASRQSSSKLSSDSSKISDASGRTSGSLKKFTENRKKKQTEAWFSCLKKGPCKTSKSPGKKRCDETSFIEKAFVVES LRQFWADKHQPGSLNGFTCHKHEAQILGQLVSHDSIPHILLKGPSGSGKKALAMALIGDIFGDACWHKTHDLRYFQEQRGAAQVVVPITSSAHHAEINVN LEPNAKTALMGLVKEIRNTYAITPDFSNVNFKPDYKVLVLYEVDKAPENIQPLMKWIMDCYTDACKLILCCEDDSDILETVKNRCKVLKVDAPVTHEIME VLIQIARKEEFDLPMNFAAKIAAKSKQNLRKAIMALEACKAHNYPFSDDQPIPFGWEEVLVELATEILIDPSPNKLFSARGKLKRLLVDFVNPKLILLKL VEQFLKGVEANSRRELYYWHAYYDKRLPTGTTALLKLEEFVAKFMSMYRKSSGTRQYV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Potri.007G022900 [exp]	0	1
AT3G25160			ER lumen protein retaining rec...		Potri.002G246700 [exp]	7.48	0.9242
					Potri.002G067000 [exp]	9.00	0.8972
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Potri.002G195600 [exp]	14.00	0.9360
					Potri.002G058200 [exp]	16.00	0.8303
AT2G39200		ATMLO12, MLO12	MILDEW RESISTANCE LOCUS O 12, ...		Potri.007G064200 [exp]	25.92	0.9121
AT3G02100			UDP-Glycosyltransferase superf...		Potri.017G091500 [exp]	31.30	0.9118
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Potri.004G180400 [exp]	35.49	0.9103
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.010G000400 [exp]	39.26	0.9097	MALD1.1
AT4G18950			Integrin-linked protein kinase...		Potri.017G123100 [exp]	41.83	0.9096
AT5G48450		SKS3	SKU5 similar 3 (.1)		Potri.008G032100 [exp]	45.34	0.9092

Compare expression of checked genes

Potri.007G022900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.