Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G120901 [exp] 298 / 2e-94 AT5G27740 240 / 8e-72 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028316 [exp] 48 / 1e-05 AT5G27740 271 / 6e-86 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10041764 [exp] 44 / 0.0001 AT5G27740 269 / 3e-84 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G022950.1 pacid=42765984 polypeptide=Potri.007G022950.1.p locus=Potri.007G022950 ID=Potri.007G022950.1.v4.1 annot-version=v4.1 ATGAGCACAGAGGAGAATGGTTCGACTAGATATAGAGGCCCTCATCCTCACCTTGTTAATGTCCTGAAGCAAAGGCGAAGTGGGTATGAGCCATCAGATA CAGAAACTGATTGGCAAGATAGTCCAAGGCGTGATCAGAAAAATGGAGCTTTTGGTCCTGAGAGTCCAATTCAGTTAGATTTACCAAGAAATGTCAGCCC TTTGAAAAACAGCAGGAGATTTTCTTCAAGATTTGATGATTATTCTCCAAAGAAGGACTCTGTTTCCAGTCCTCCTCGAAGGAGGCACAGCAGCAAGTCA CCCTACAAGCCACAAAGAGATAATCGTAGTTCTGAACCTATCCCAAATCAGAGAAATGTCGATCCCTTGTTAAGAAGACAAATTTCCCCATATAAGGCAC AGAGAGATGAAGGTGGTTCTGTTTCACCTACATCAAGTCGGAGAAATCTTGATAACTTGTTAAAATCTGAGTCAGGAAGACAAGTTTCTCCTTGCAAGGC ACAAAGAGAAGAAGGTTGTGCTGTTTCACCTGAATCAAGCCAGGCAAATGTAAGTTCCTTGTCGAAACCAGACCAGAGAAGACAAGTTTCTCCCTACAAG GCACAAAGAGAAGAAGGTGGTGCTGTTTCACCTGAATCGAGCCAGAGAAATGCAAGTCCCTTGTCAAAACCAGACCAGAGAAGACAAGTTTCTCCTTACA AGGCACAAAGAGGAGGTGGTGCTGTTTCACCTAAACCCAGGCAGAGAAACGTTAGTCCCTTGTCAAAGCCAGACAAGGGAAGACAAATTTCTCCTTTTAA ATCTGGGAGAAAGGAGCATGGTATGCATGAAGATGGTGAGATTGTAAGCTCCAACAGAAGGAAAAATCAAAGGATGCCTACTAGAGAAGAAAGGAGCACT CAATTACAATTTGACGAAGACAGTAGATTGAGTGAGAGACAGAATGCTAGTCGTAGAATGGCAGCGGCGCCAAAACAAAGGGTCTGGGACAAGGAACAGG TAAGCAGTCATGATCATAAAGAGCAAAAGGGGGGAAGAAGTGTTGGGTAA
AA sequence Show only first row Show all	>Potri.007G022950.1 pacid=42765984 polypeptide=Potri.007G022950.1.p locus=Potri.007G022950 ID=Potri.007G022950.1.v4.1 annot-version=v4.1 MSTEENGSTRYRGPHPHLVNVLKQRRSGYEPSDTETDWQDSPRRDQKNGAFGPESPIQLDLPRNVSPLKNSRRFSSRFDDYSPKKDSVSSPPRRRHSSKS PYKPQRDNRSSEPIPNQRNVDPLLRRQISPYKAQRDEGGSVSPTSSRRNLDNLLKSESGRQVSPCKAQREEGCAVSPESSQANVSSLSKPDQRRQVSPYK AQREEGGAVSPESSQRNASPLSKPDQRRQVSPYKAQRGGGAVSPKPRQRNVSPLSKPDKGRQISPFKSGRKEHGMHEDGEIVSSNRRKNQRMPTREERST QLQFDEDSRLSERQNASRRMAAAPKQRVWDKEQVSSHDHKEQKGGRSVG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.007G022950 [exp]	0	1
AT3G50760		GATL2	galacturonosyltransferase-like...		Potri.005G128000 [exp]	2.64	0.7681
AT3G05390			unknown protein		Potri.004G232200 [exp]	4.24	0.7513
AT1G76520			Auxin efflux carrier family pr...		Potri.011G145600 [exp]	21.35	0.7626
AT5G64310		ATAGP1, AGP1	arabinogalactan protein 1 (.1)		Potri.001G310400 [exp]	47.00	0.6963
					Potri.005G074601 [exp]	53.66	0.6896
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Potri.006G082500 [exp]	70.64	0.6538
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.011G128000 [exp]	75.90	0.6867
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Potri.010G223300 [exp]	91.50	0.6827
AT1G16670			Protein kinase superfamily pro...		Potri.010G221400 [exp]	98.66	0.6631

Compare expression of checked genes

Potri.007G022950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.