Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18245 330 / 2e-110 alpha/beta-Hydrolases superfamily protein (.1) AT3G19970 252 / 1e-79 alpha/beta-Hydrolases superfamily protein (.1) AT2G15695 43 / 0.0004 Protein of unknown function DUF829, transmembrane 53 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G089000 [exp] 242 / 8e-76 AT3G19970 509 / 5e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G075400 [exp] 236 / 1e-73 AT3G19970 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G127600 [exp] 47 / 1e-05 AT5G44250 501 / 1e-177 Protein of unknown function DUF829, transmembrane 53 (.1.2) Potri.014G031800 [exp] 44 / 0.0002 AT5G44250 496 / 7e-176 Protein of unknown function DUF829, transmembrane 53 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026001 [exp] 344 / 3e-116 AT2G18245 283 / 2e-92 alpha/beta-Hydrolases superfamily protein (.1) Lus10014294 [exp] 263 / 3e-84 AT2G18245 195 / 2e-71 alpha/beta-Hydrolases superfamily protein (.1) Lus10028314 [exp] 258 / 6e-84 AT2G18245 216 / 1e-67 alpha/beta-Hydrolases superfamily protein (.1) Lus10017376 [exp] 252 / 2e-79 AT3G19970 534 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10010171 [exp] 246 / 2e-77 AT3G19970 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10041762 [exp] 138 / 1e-39 AT2G18245 102 / 1e-26 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF05705 [poplar] [flax] DUF829 Eukaryotic protein of unknown function (DUF829)
Representative CDS sequence Show only first row Show all	>Potri.007G023000.2 pacid=42764860 polypeptide=Potri.007G023000.2.p locus=Potri.007G023000 ID=Potri.007G023000.2.v4.1 annot-version=v4.1 ATGGAAGCTCCCGTAAGGGTCATCAATCGCAGTCTCTTCACTAAACCAACATCAACGACTTCAAATTTTCTAAAACCCATTTCAATAATCCATCGATCGA TACCCTCACAACGACAAAATCTCCAGACCCACATCGTATCAACACCCAAATTGTCTCATTCTCGCATTCACTCTTCATTTTCACCGTTCTCTCACTCACC CGTTACTCCTAATTCAAACCCCATTAAATTCCTCCTCTCGCTTTCCTCTTCTCATCTCTCAAACCCCACCAAGAACTCTGATTTTAACTTCAAATCTCAT CAAAATGAGAGGCCTTTTACGTGGAACAAAGCACCAGAGAGTGTTGTTAGCGGTAAAGGTAGTGTCTTTAGTGATAAAAAACCAGTTGCGACTGTGGTTC TGCTTGGCTGGCTTGGAGCTAGAGAGAAACATCTCAGAAAGTACGTGGAATGGTATAATTCAAGAGGGATTCATGCTGTTACGTTTGTCGTTGATATGAG AGAGTTGCTTTGCTTTGATTTTGGGAAGAGAGTGGAGAAGAGGATCACTGAATTGGCTAATGAGCTTGTTTCGTGGGTTTCTGAGAGAGAAGATGATGGT AGAGAGAGATGTTTGTTTTTTCACACCTTTAGTAACACTGGTTGGCTTGTGTATGGTTATATCCTTGGGGTTATGCAAGAGAGGGAGGGACTAATTGAGA AGATTAAAGGGTGTGTTTCTGATTCTGGAGGTGGCAATCAGTTAAATCCTAAGGTCTGGGCTGGTGGGTTCTCTGCTGCCTTGCTGAAGAAACGCAGCTC TTCTGTGCAAGTTATTGAGACTAAAGAAATAAATGGATTAGAAAATCAAGCCAGTGAATCAAAAGAGCAAGAAAATGAACCTTCAATGATCGAGGCCATG GTGCTATATGTATTTGAGATGCTATTCTCTGTAGTTCTGAAGTTGCCAGAAGTGGATCAGAAGTTAACGGAAATTGTGTCCACACTCTCAAAAAAGCAGC CTTCCTGTCCCCACCTTTTTCTATATAGCACAGCAGATAAACTTGTTCCATTTCAATTGATAGAGTTGGAGATCCAGGATCAGAGGAGAATGGGGAGAAG GGTAATGTCCTATAATTTTGAGTCATCCCCCCATGTGGACCACTTCAGAACTTTCCCCGATATGTATTCATTACTGCTTCATAATTTCTTGAAGGAGTGT TTTCCAGTAGCTAAACAGATTTGA
AA sequence Show only first row Show all	>Potri.007G023000.2 pacid=42764860 polypeptide=Potri.007G023000.2.p locus=Potri.007G023000 ID=Potri.007G023000.2.v4.1 annot-version=v4.1 MEAPVRVINRSLFTKPTSTTSNFLKPISIIHRSIPSQRQNLQTHIVSTPKLSHSRIHSSFSPFSHSPVTPNSNPIKFLLSLSSSHLSNPTKNSDFNFKSH QNERPFTWNKAPESVVSGKGSVFSDKKPVATVVLLGWLGAREKHLRKYVEWYNSRGIHAVTFVVDMRELLCFDFGKRVEKRITELANELVSWVSEREDDG RERCLFFHTFSNTGWLVYGYILGVMQEREGLIEKIKGCVSDSGGGNQLNPKVWAGGFSAALLKKRSSSVQVIETKEINGLENQASESKEQENEPSMIEAM VLYVFEMLFSVVLKLPEVDQKLTEIVSTLSKKQPSCPHLFLYSTADKLVPFQLIELEIQDQRRMGRRVMSYNFESSPHVDHFRTFPDMYSLLLHNFLKEC FPVAKQI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18245			alpha/beta-Hydrolases superfam...		Potri.007G023000 [exp]	0	1
AT2G20690			lumazine-binding family protei...		Potri.013G131800 [exp]	5.47	0.8258
AT1G07020			unknown protein		Potri.009G077700 [exp]	9.05	0.7640	CALS1.1
AT3G02780		IDI2, IPIAT1, I...	ATISOPENTENYL DIPHOSPHE ISOMER...		Potri.019G053700 [exp]	10.67	0.8061
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Potri.019G030900 [exp]	37.41	0.7997	Pt-SIP1.2
AT3G54130			Josephin family protein (.1)		Potri.016G110300 [exp]	57.23	0.7233
AT2G35790			unknown protein		Potri.010G219400 [exp]	111.36	0.7406
AT1G01980		ATSEC1A	FAD-binding Berberine family p...		Potri.001G462600 [exp]	178.72	0.7316

Compare expression of checked genes

Potri.007G023000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.