Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66530 483 / 1e-173 Galactose mutarotase-like superfamily protein (.1.2) AT5G57330 157 / 8e-46 Galactose mutarotase-like superfamily protein (.1) AT3G01590 143 / 1e-40 Galactose mutarotase-like superfamily protein (.1.2) AT4G23730 140 / 3e-39 Galactose mutarotase-like superfamily protein (.1) AT4G25900 139 / 1e-38 Galactose mutarotase-like superfamily protein (.1) AT3G61610 137 / 3e-38 Galactose mutarotase-like superfamily protein (.1) AT5G14500 135 / 2e-37 aldose 1-epimerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G089800 [exp] 167 / 2e-49 AT5G57330 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.006G165400 [exp] 163 / 4e-48 AT5G57330 525 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.003G187300 [exp] 157 / 7e-46 AT5G57330 475 / 3e-170 Galactose mutarotase-like superfamily protein (.1) Potri.001G037700 [exp] 155 / 5e-45 AT5G57330 483 / 2e-173 Galactose mutarotase-like superfamily protein (.1) Potri.001G344100 [exp] 152 / 5e-44 AT5G14500 501 / 0.0 aldose 1-epimerase family protein (.1) Potri.001G095300 [exp] 147 / 6e-42 AT3G61610 461 / 3e-165 Galactose mutarotase-like superfamily protein (.1) Potri.002G167200 [exp] 143 / 2e-40 AT3G61610 513 / 0.0 Galactose mutarotase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041758 [exp] 520 / 0 AT5G66530 485 / 1e-174 Galactose mutarotase-like superfamily protein (.1.2) Lus10028310 [exp] 516 / 0 AT5G66530 485 / 2e-174 Galactose mutarotase-like superfamily protein (.1.2) Lus10020015 [exp] 155 / 1e-44 AT5G57330 534 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10014621 [exp] 152 / 7e-44 AT5G14500 490 / 2e-176 aldose 1-epimerase family protein (.1) Lus10017549 [exp] 149 / 7e-43 AT4G23730 475 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10032084 [exp] 150 / 3e-42 AT5G14500 494 / 2e-176 aldose 1-epimerase family protein (.1) Lus10015540 [exp] 147 / 5e-42 AT5G57330 522 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10028739 [exp] 147 / 6e-42 AT4G23730 474 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10012640 [exp] 144 / 9e-41 AT3G61610 511 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10010131 [exp] 144 / 1e-40 AT3G61610 518 / 0.0 Galactose mutarotase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [poplar] [flax] Gal_mutarotase PF01263 [poplar] [flax] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Potri.007G023200.2 pacid=42765766 polypeptide=Potri.007G023200.2.p locus=Potri.007G023200 ID=Potri.007G023200.2.v4.1 annot-version=v4.1 ATGGCGATGGTCTCTATGTCATTTTCTCTTCCTAACCTTAACCTACGCCGAGTCAACCGATACTCTGGAATGGCATTTGCAAGTGTAAATAAAGAAACTA GTACAACTGTAGGTGTGAGAGTCACAGAAGGTGAAGGTAACTTGCCCAAGGTTGTCCTCACTTCTCCTCATGGTAGTGAGGCAGAGATATATCTATTTGG AGGTTGCCTTACATCTTGGAAAGTTCCCAATGGAAAAGACCTCCTTTTTGTTAGGCCGGATGCTGTGTTTAACAAGAAAAAACCAATCAGTGGAGGTGTG CCACATTGTTTCCCACAGTTTGGCCCCGGTGCTATTCAGCAGCATGGATTTGCTAGGAATTTGGATTGGTCAGTTGTTGATTCTGATAATGCCGATGGCA ATCCGGTGGTAACCCTTTTGCTCAAGGATGGTCCTTATAGTCGTTCCATGTGGGACTTCGGTTTTCAAGCTCTATACAAGGTCATTCTAAATTCAAAGAG CATTTCCACAGAACTGACAATCACAAATACCGATAACAAGCCATTTTCATTCACTAGTGCTTTGCACACATACTTCAGTGCATCTGTAACAGGAGCATCT GTGAAAGGTTTGAAAGGTTGCAAAACCCTGGACAAAGAGCTGGATCCTACCAATCCAGTGGAGGGCAAGGAAGAAAGGGATGTGGTGATTTTCCCTGGAT TTGTAGACCGAGTTTATCTTGATGCTCCAAGTGAGTTGCAGCTAGATAATGGCTTGGGCGATGTAATAACTATCAAGAATACAAATTGGTCAGATACTGT TTTGTGGAACCCGCATCTGCAGATGGAAGCATGCTACAAAGATTTTGTTTGTGTTGAAAATGCACAGATTGGAAATGTCCAGCTAGAGCCTCAGCAGTCC TGGACAGCTAAGCAGCATCTTAGCATTGACTGA
AA sequence Show only first row Show all	>Potri.007G023200.2 pacid=42765766 polypeptide=Potri.007G023200.2.p locus=Potri.007G023200 ID=Potri.007G023200.2.v4.1 annot-version=v4.1 MAMVSMSFSLPNLNLRRVNRYSGMAFASVNKETSTTVGVRVTEGEGNLPKVVLTSPHGSEAEIYLFGGCLTSWKVPNGKDLLFVRPDAVFNKKKPISGGV PHCFPQFGPGAIQQHGFARNLDWSVVDSDNADGNPVVTLLLKDGPYSRSMWDFGFQALYKVILNSKSISTELTITNTDNKPFSFTSALHTYFSASVTGAS VKGLKGCKTLDKELDPTNPVEGKEERDVVIFPGFVDRVYLDAPSELQLDNGLGDVITIKNTNWSDTVLWNPHLQMEACYKDFVCVENAQIGNVQLEPQQS WTAKQHLSID

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66530			Galactose mutarotase-like supe...		Potri.007G023200 [exp]	0	1
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Potri.016G109000 [exp]	3.46	0.9644
AT3G04760			Pentatricopeptide repeat (PPR-...		Potri.013G047000 [exp]	3.46	0.9661
AT1G64150			Uncharacterized protein family...		Potri.003G134300 [exp]	7.48	0.9643
AT1G49975			unknown protein		Potri.001G292000 [exp]	8.48	0.9646
AT2G42770			Peroxisomal membrane 22 kDa (M...		Potri.010G032900 [exp]	8.77	0.9162
AT3G27160		GHS1	GLUCOSE HYPERSENSITIVE 1, Ribo...		Potri.001G331600 [exp]	10.72	0.9635	GHS1.1
AT2G33450			Ribosomal L28 family (.1)		Potri.008G169800 [exp]	12.40	0.9516
AT2G21960			unknown protein		Potri.005G084400 [exp]	15.58	0.9496
AT1G56190			Phosphoglycerate kinase family...		Potri.010G171500 [exp]	19.41	0.9474	Pt-PGK1.1
AT5G13400			Major facilitator superfamily ...		Potri.001G068600 [exp]	19.94	0.8851

Compare expression of checked genes

Potri.007G023200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.