Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18290 314 / 7e-111 EMB2783, APC10 EMBRYO DEFECTIVE 2783, anaphase promoting complex 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G121700 [exp] 342 / 1e-121 AT2G18290 318 / 2e-112 EMBRYO DEFECTIVE 2783, anaphase promoting complex 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028308 [exp] 341 / 2e-121 AT2G18290 343 / 4e-122 EMBRYO DEFECTIVE 2783, anaphase promoting complex 10 (.1) Lus10041756 [exp] 318 / 3e-112 AT2G18290 346 / 3e-123 EMBRYO DEFECTIVE 2783, anaphase promoting complex 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF03256 [poplar] [flax] ANAPC10 Anaphase-promoting complex, subunit 10 (APC10)
Representative CDS sequence Show only first row Show all	>Potri.007G023500.2 pacid=42765213 polypeptide=Potri.007G023500.2.p locus=Potri.007G023500 ID=Potri.007G023500.2.v4.1 annot-version=v4.1 ATGGCGACAGAATCATCAGAAGGAGAAGAAGAAGGGAAGATCACAGGAGGAAACAAGCTCTTGGTTATAGAAGATGATCTTAGAGAAATGGGAAAAAAAG CTGCTTGGAGTGTTAGTTCTTGCAAACCTGGAAATGGGGTCTCTTCTCTTAGAGATGACAATCTTGACACTTATTGGCAATCAGATGGAGCACAGCCCCA TTTGGTTAATATTCAATTTCAGAAGAAAGTGAAGCTGCAATTAGTTGTTCTTTATGTGGATTTTAAGCTTGATGAGAGTTACACACCTAGTAAGATTTCG ATTCGTGCTGGTGATGGGTTTCATAATTTGAAGGAGATTAAGACTATGGAACTTGTGAAGCCAACTGGGTGGGTTTATCTTTCCTTATCTGGAAATGATC CCAGGGAAACATTTGTCAATACATTTATGTTGCAAATTGCTGTGCTATCAAATCACCTTAATGGAAGGGATACTCATGTACGCCAGATCAAAGTTTATGG GCCTCAGCTGAACCCTTTTCCACATCAGCCTTTTCAATTTACTTCAAGGGAATTCATTACATACTCTTCTGTGAGATGA
AA sequence Show only first row Show all	>Potri.007G023500.2 pacid=42765213 polypeptide=Potri.007G023500.2.p locus=Potri.007G023500 ID=Potri.007G023500.2.v4.1 annot-version=v4.1 MATESSEGEEEGKITGGNKLLVIEDDLREMGKKAAWSVSSCKPGNGVSSLRDDNLDTYWQSDGAQPHLVNIQFQKKVKLQLVVLYVDFKLDESYTPSKIS IRAGDGFHNLKEIKTMELVKPTGWVYLSLSGNDPRETFVNTFMLQIAVLSNHLNGRDTHVRQIKVYGPQLNPFPHQPFQFTSREFITYSSVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18290		EMB2783, APC10	EMBRYO DEFECTIVE 2783, anaphas...		Potri.007G023500 [exp]	0	1
AT5G58575			unknown protein		Potri.009G074400 [exp]	9.48	0.7198
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Potri.001G295100 [exp]	10.86	0.7059
AT1G02740			MRG family protein (.1)		Potri.014G022400 [exp]	26.72	0.7392
AT2G18410			unknown protein		Potri.004G099000 [exp]	35.21	0.7432
AT3G57000			nucleolar essential protein-re...		Potri.016G037500 [exp]	35.29	0.7454
AT3G60470			Plant protein of unknown funct...		Potri.014G053700 [exp]	39.20	0.7200
AT5G27660			Trypsin family protein with PD...		Potri.013G018300 [exp]	41.47	0.7004
AT2G41140		CRK1, ATCRK1, A...	CDPK-related kinase 1 (.1)		Potri.016G035500 [exp]	52.67	0.7237	CRK1.2
AT4G03460			Ankyrin repeat family protein ...		Potri.019G106000 [exp]	57.05	0.6823
AT4G03500			Ankyrin repeat family protein ...		Potri.019G108801 [exp]	58.01	0.7195

Compare expression of checked genes

Potri.007G023500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.