Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18300 182 / 4e-54 bHLH bHLH064, HBI1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G34530 171 / 9e-50 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT4G36540 167 / 6e-49 bHLH bHLH058, BEE2 BR enhanced expression 2 (.1.2) AT1G68920 154 / 2e-42 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT3G07340 152 / 7e-42 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G59640 146 / 2e-41 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2) AT3G23690 148 / 5e-41 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G62610 144 / 4e-40 bHLH bHLH079 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G48560 147 / 1e-39 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G26260 143 / 3e-39 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G121850 [exp] 554 / 0 AT4G34530 177 / 3e-52 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.004G156000 [exp] 210 / 9e-64 AT4G34530 206 / 1e-62 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.009G117300 [exp] 209 / 2e-63 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.002G248500 [exp] 155 / 3e-42 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G146500 [exp] 151 / 1e-41 AT1G10120 266 / 3e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G148900 [exp] 153 / 2e-41 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G113200 [exp] 153 / 3e-41 AT1G68920 388 / 1e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.015G068100 [exp] 146 / 4e-41 AT5G62610 263 / 7e-88 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G136100 [exp] 151 / 9e-41 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026008 [exp] 200 / 2e-61 AT2G18300 168 / 8e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10014300 [exp] 166 / 5e-48 AT2G18300 171 / 3e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10023562 [exp] 160 / 4e-46 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10040448 [exp] 157 / 5e-45 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Lus10013052 [exp] 155 / 2e-42 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10030807 [exp] 149 / 4e-42 AT1G59640 300 / 6e-103 BIG PETAL UB, BIG PETAL P (.1.2) Lus10029110 [exp] 154 / 5e-42 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10013284 [exp] 148 / 6e-42 AT1G59640 303 / 3e-104 BIG PETAL UB, BIG PETAL P (.1.2) Lus10033120 [exp] 145 / 1e-40 AT5G62610 265 / 9e-89 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003172 [exp] 145 / 4e-40 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.007G023600.1 pacid=42766017 polypeptide=Potri.007G023600.1.p locus=Potri.007G023600 ID=Potri.007G023600.1.v4.1 annot-version=v4.1 ATGCTGTCTCAAAAACACATCTTTTGCATGGATATGAGTGTATTAGAAAGACAGCAAGCGAGGTTCAAGTGGTTGCTGCTACTGCAGCAGGAGAACAACT ACGTAAACCAATACAATTCCATTGAATCCTGTTCAATGCCTCCTGATCTGTTTCATGGCTTCTTTGATCATGAGTCAATGAATGGAGATAGGATTGATTG GAAGGAGCAGCCCGAAATCTATCTGGGGAACAATGATTTACCAAAATATGGTGTTTTTTCATTGAATGGCACAGAGTTCGTAGCTAATAATAAGATGGAT TTTGGAGAAGCAGAGGTAACGGCACGGTCTCTCGAGATTGATCATTGTCTTTCAAGGACTTCTAGTTGCCAAATTGGGGTGGTAGAGGCTGCAAAAATAG AGGAGGTGGTAGCAGTAAATGTGGCAGGTGAAGATGTGACCTTGATGGAGAATAAGCAATCCAACCATGGTAGGAGAGACAATTCAAATAAGAGGAAAGC AGAGTTTATTGCAGCAGAACAGAGTGACGATAAGATTAAATTAGAAGAAGATGAGCCCAAGGTTAAAGAGAAAGGCAGTCCAGAAATTTCAGCAGATTCT TCGAAGGAAAATCAGAAGACTTCAGCCTTACCTAAGACAGACTACATTCATGTGCGGGCACGTCGCGGCCAGGCTACTGACAGTCACAGCTTAGCAGAAA GAGCCAGGAGGGAAAAGATTAGTAAGAAAATGAAATGCCTGCAAGATCTAGTCCCTGGATGCAACAAGATAACAGGCAGGGCCGGAATGCTTGACGAAAT CATCAATTATGTCCAATCTCTTCAAAGACAAGTAGAGTTCATATCCATGAAACTTGCTGCTGTAAATCGAAGACCAGATACCGACAACGTTTCCGGTAAA GAGTCACCTGCTTACATCGCAAGTTTTCCAGCAGCCACTATGTCCTCAACAATTGCCAATTTGCCCCACCTTCAACTGAATCTAGTGCAACAACAGGCAA CAAGCAGTAGACCGAAAGCTTTGACAGATACTTTTCAACTTGTGCCTGAAAAAGCTACAAGTTCCTCAGCATTGATCAATGACCTATGCCTTGATCATTC ACTAGCTCAAGTCCAACCTTTTTGGGATGCTGACTCACAAAACCTTCAAAATTTGGGATTCCATTAA
AA sequence Show only first row Show all	>Potri.007G023600.1 pacid=42766017 polypeptide=Potri.007G023600.1.p locus=Potri.007G023600 ID=Potri.007G023600.1.v4.1 annot-version=v4.1 MLSQKHIFCMDMSVLERQQARFKWLLLLQQENNYVNQYNSIESCSMPPDLFHGFFDHESMNGDRIDWKEQPEIYLGNNDLPKYGVFSLNGTEFVANNKMD FGEAEVTARSLEIDHCLSRTSSCQIGVVEAAKIEEVVAVNVAGEDVTLMENKQSNHGRRDNSNKRKAEFIAAEQSDDKIKLEEDEPKVKEKGSPEISADS SKENQKTSALPKTDYIHVRARRGQATDSHSLAERARREKISKKMKCLQDLVPGCNKITGRAGMLDEIINYVQSLQRQVEFISMKLAAVNRRPDTDNVSGK ESPAYIASFPAATMSSTIANLPHLQLNLVQQQATSSRPKALTDTFQLVPEKATSSSALINDLCLDHSLAQVQPFWDADSQNLQNLGFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Potri.007G023600 [exp]	0	1
					Potri.004G050700 [exp]	5.29	0.9109
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Potri.004G031800 [exp]	5.65	0.8712
AT4G26555			FKBP-like peptidyl-prolyl cis-...		Potri.001G467100 [exp]	7.54	0.8948
AT5G49760			Leucine-rich repeat protein ki...		Potri.003G046450 [exp]	9.48	0.8713
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Potri.017G072800 [exp]	9.59	0.9051
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.006G258500 [exp]	13.60	0.8880
					Potri.017G095500 [exp]	18.89	0.8647
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.006G258550 [exp]	21.16	0.8854
AT4G23290		CRK21	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111751 [exp]	21.44	0.8761
AT1G60550		ECHID, DHNS	enoyl-CoA hydratase/isomerase ...		Potri.001G329900 [exp]	25.41	0.8689

Compare expression of checked genes

Potri.007G023600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.