Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67530 328 / 1e-100 ARM repeat superfamily protein (.1.2) AT4G36550 326 / 2e-100 ARM repeat superfamily protein (.1) AT1G24330 321 / 4e-98 ARM repeat superfamily protein (.1) AT1G27910 292 / 2e-87 ATPUB45 ARABIDOPSIS THALIANA PLANT U-BOX 45, plant U-box 45 (.1) AT3G46510 122 / 1e-28 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G07360 110 / 2e-25 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT1G29340 108 / 4e-24 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT2G28830 108 / 4e-24 AtPUB12 PLANT U-BOX 12 (.1) AT5G42340 105 / 2e-23 PUB15 Plant U-Box 15 (.1) AT1G23030 100 / 1e-21 PUB11 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G122100 [exp] 1177 / 0 AT4G36550 441 / 2e-143 ARM repeat superfamily protein (.1) Potri.005G228100 [exp] 538 / 0 AT4G36550 329 / 5e-102 ARM repeat superfamily protein (.1) Potri.010G058000 [exp] 318 / 7e-97 AT1G24330 1079 / 0.0 ARM repeat superfamily protein (.1) Potri.008G177100 [exp] 317 / 2e-96 AT1G24330 1025 / 0.0 ARM repeat superfamily protein (.1) Potri.009G029600 [exp] 122 / 2e-28 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 121 / 3e-28 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.019G029500 [exp] 105 / 9e-24 AT3G07360 495 / 6e-174 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.002G248600 [exp] 105 / 1e-23 AT3G07360 573 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.010G226500 [exp] 105 / 3e-23 AT3G54850 806 / 0.0 plant U-box 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028307 [exp] 696 / 0 AT4G36550 417 / 1e-135 ARM repeat superfamily protein (.1) Lus10041754 [exp] 673 / 0 AT4G36550 404 / 6e-131 ARM repeat superfamily protein (.1) Lus10015801 [exp] 327 / 6e-100 AT1G24330 1027 / 0.0 ARM repeat superfamily protein (.1) Lus10037005 [exp] 319 / 4e-97 AT1G24330 1029 / 0.0 ARM repeat superfamily protein (.1) Lus10006427 [exp] 317 / 1e-96 AT1G24330 993 / 0.0 ARM repeat superfamily protein (.1) Lus10011370 [exp] 313 / 6e-95 AT1G24330 1000 / 0.0 ARM repeat superfamily protein (.1) Lus10009594 [exp] 107 / 2e-24 AT3G07360 482 / 2e-168 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10016565 [exp] 108 / 3e-24 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10043471 [exp] 107 / 8e-24 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10040834 [exp] 106 / 2e-23 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain CL0020 [poplar] [flax] TPR PF05804 [poplar] [flax] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Potri.007G023700.1 pacid=42766428 polypeptide=Potri.007G023700.1.p locus=Potri.007G023700 ID=Potri.007G023700.1.v4.1 annot-version=v4.1 ATGGGGACTGATGCTGCTGAAGCAGTGGAGACACTTCCGTGTCCTTATTCCTTCAAGGTGCATCACTCTATGTGTACAGAGTTGCTGAAGTTGGTTGATA AAGTTTCTAAAATATTTCCAAAAATCGAAGCAGCTCGACCTTGTTGCTCATTGGGAATACAGGCACTATGCTCGTTAAACAATGCACTTGAGAAAGCCAA GCACCATCTTCAGTACTGTTGCGACTCTAGCAAACTATATTTGGCAATAACAGGGGATGTGGTTGTCTCAAGATGTCAAAGATCAAGGAACTTGATGGAA CAGAGTTTAGGCCAGATTCAAACAATGGTTCCAGTAATATTGGCTGCTGAGATATCTCATGTTGTTGATGACCTTAGGGCTGCAATGTTTATGCTGGAAT CCTCTGAAGAAGAGGCTGGTAAAGCCATTCGTGAATTGCTTCAGCAGAGCAGAGAATCAGATTCAGTGGTAAATTCTGAAATCAAAGCTATTCAACTTGC AGCTTCGAGGCTGCATATTACATCCCGAAAGGCCATACTGATAGAAAAAAGATCTATTAAGAATCAGCTAGATAAAGTTGGTGGCAACGATCCCAGAAAA AAGAGTATCTTAAATTACCTTATGCTTCTCTTGAAGAAGCACGGAGACTTACTCATTGAAGAGCAAGGAGAGACTCCCAAATCTCAGCATGAAGGATTCT TTTCGCTTAAGAACCCTAATGATACTTTTCTTCATAGGCAATACAATCAAGTAGCTGGTATAGGATGTGGGAAGTCTGAGACTCAAACTGAATTGTTTAG CAGAGCTACACCCCCTGAAGAATTTAAGTGTCCTATATCTATGAGAGTGATGTATGATCCTGTTGTCATTGCTTCTGGACAAACATTTGAAAAGATGTGG ATACAGAAGTGGTTTGATGAGGGTAATGATACATGCCCAAAAACCAAAGTGAAACTGACTCATCGTGCATTGACTCCAAACACATGCATTAAAGACCTGA TATCAAAGTGGTGTGTGAAGTATGGAATTACCATTCCTGATCCATGTATTCAAGCATCGAAGTTATTGGACATCTCTGTTAATTCCATTGCAAGTTTAGG CAGTTCCATGAGTGATCTACACCTTCCACTGGATATTAGTAATATATCACTTGGGTCTATAGATGGTAGTTACAGTTCAGAGTCTGCACAATCTAAGTCA AATTTGATGCCGATACAGAATAATGATGATTCCTATAGACATCACTCATATGTAAATATCAATCAGCAAGACTTGAAGTCTCTGTCTGGACTTGCTGAGC TTCCCTGGGAATCTCAATGCAAGATGGTTGAAGATGTCAAGAGTTGTTTGCAGTGTAATGATCAACTTTGTCATTCTTTATCATCTGAGAATTTTGTTGA ACCTCTATTTAGATTCTTGAGGGATGCACATGACCAACAAGATATAGGAGCTCAGAGATTTGGATATCAATTGTTGCTTTCATTTGCCAGCAAAAACAGA AGTGGAATATCATACTTACATGAAGACGTTTATGTTCTGTTGTCATCGTTCCCTGATTCTGAAGTAATTGAAGAGGTTCTTGCCATATTTGAAGTGCTGT CTGGACACCCATATTGCCAATCTAAAATCACTGCATCTGGTGCTCTTGTTTCTATCCGAAGGATCCTTGACTCCCACAGCACAGAATTCCAGAAACAAGC CATTAAAATTCTGCATAATTTGTCGTCAAACAATGATATTTGTTCCCAAATTGTATTGATGGAGTGCATCCCAAAATTGGTTCCTTTGCTTAAGAATGGC AATCTTTCAAGTTATTCTGTAGTTCTACTAAGAAATTTGTGTGATATTGAAGAGGCTAGGGTTTCTGTTGCTGAAACAAATGGATGCATTGCCTCCATTG CTGAGCTACTTGAGAGTGGCAGTCGTGAGGAACAAGAACATGCAGCAGCTATTCTGCTTTCCTTGTGCTCTCAGCGTCTTCATTATTGTCAGCTGGTCAT GGAAGAAGGTGTTATCCCTTCCCTTGTTGATATATCTATCAATGGAACTGACAAAGGGAGAGCGATTGCTTTGGAATTGCTCCGGCAGTTAAGAGACATA ACTGAATATGATAATGAGCATGAATGTTTTGTTTCTGATATTGATGCTGATAGAGATGCCAGCCACCAAACAATAGAAAAGAAATCTGTTGTTGATGCTG ATAGAGATGCCAGCCACGAAACAATAAAAAAGAAATCATCCCCCAAGACATATGGAGTTTTCAAGAATTTATCAGTGTTCTCTAGACGCAGTTCTGTTGC ATCAAAAAAGAAGAGATGA
AA sequence Show only first row Show all	>Potri.007G023700.1 pacid=42766428 polypeptide=Potri.007G023700.1.p locus=Potri.007G023700 ID=Potri.007G023700.1.v4.1 annot-version=v4.1 MGTDAAEAVETLPCPYSFKVHHSMCTELLKLVDKVSKIFPKIEAARPCCSLGIQALCSLNNALEKAKHHLQYCCDSSKLYLAITGDVVVSRCQRSRNLME QSLGQIQTMVPVILAAEISHVVDDLRAAMFMLESSEEEAGKAIRELLQQSRESDSVVNSEIKAIQLAASRLHITSRKAILIEKRSIKNQLDKVGGNDPRK KSILNYLMLLLKKHGDLLIEEQGETPKSQHEGFFSLKNPNDTFLHRQYNQVAGIGCGKSETQTELFSRATPPEEFKCPISMRVMYDPVVIASGQTFEKMW IQKWFDEGNDTCPKTKVKLTHRALTPNTCIKDLISKWCVKYGITIPDPCIQASKLLDISVNSIASLGSSMSDLHLPLDISNISLGSIDGSYSSESAQSKS NLMPIQNNDDSYRHHSYVNINQQDLKSLSGLAELPWESQCKMVEDVKSCLQCNDQLCHSLSSENFVEPLFRFLRDAHDQQDIGAQRFGYQLLLSFASKNR SGISYLHEDVYVLLSSFPDSEVIEEVLAIFEVLSGHPYCQSKITASGALVSIRRILDSHSTEFQKQAIKILHNLSSNNDICSQIVLMECIPKLVPLLKNG NLSSYSVVLLRNLCDIEEARVSVAETNGCIASIAELLESGSREEQEHAAAILLSLCSQRLHYCQLVMEEGVIPSLVDISINGTDKGRAIALELLRQLRDI TEYDNEHECFVSDIDADRDASHQTIEKKSVVDADRDASHETIKKKSSPKTYGVFKNLSVFSRRSSVASKKKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67530			ARM repeat superfamily protein...		Potri.007G023700 [exp]	0	1
AT1G70740			Protein kinase superfamily pro...		Potri.008G132300 [exp]	1.00	0.9069
AT4G39830			Cupredoxin superfamily protein...		Potri.007G088222 [exp]	16.15	0.8976
AT2G28890		PLL4	poltergeist like 4 (.1)		Potri.001G239300 [exp]	27.27	0.8688
AT1G53050			Protein kinase superfamily pro...		Potri.013G130000 [exp]	29.56	0.8741
AT5G36930			Disease resistance protein (TI...		Potri.019G003285 [exp]	32.18	0.8951
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Potri.006G202200 [exp]	32.49	0.8646	SYP121.2
AT5G54490		PBP1	pinoid-binding protein 1 (.1)		Potri.019G120600 [exp]	33.98	0.8907
					Potri.008G085150 [exp]	34.64	0.8153
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Potri.001G409500 [exp]	35.72	0.8657
AT1G21010			unknown protein		Potri.005G259100 [exp]	42.24	0.8790

Compare expression of checked genes

Potri.007G023700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.