Plant FIBer expression Database

Potri.007G024000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G36600 92 / 1e-20 Late embryogenesis abundant (LEA) protein (.1)
AT2G18340 57 / 1e-08 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G122400
[exp]
543 / 0 AT4G36600 92 / 3e-20 Late embryogenesis abundant (LEA) protein (.1)
Potri.010G002600
[exp]
44 / 0.0002 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008638
[exp]
42 / 0.0007 AT2G36640 249 / 4e-77 embryonic cell protein 63 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02987 LEA_4 Late embryogenesis abundant protein
Representative CDS sequence
>Potri.007G024000.1 pacid=42765733 polypeptide=Potri.007G024000.1.p locus=Potri.007G024000 ID=Potri.007G024000.1.v4.1 annot-version=v4.1
ATGGAGAAGAGAGTTGCGGTGATTATCATGGTGATGGTGCTATGGATGGAGGTGTCTTTGTGCTGGAGTACTAGTTATTCTACTGAGGATTTGGTGGAGA
ATACGAAGGAAAGAGTGAATTTGGCAGCGGAAGATGCAAGGATCAAGGCTGAAGAGATGAAGCATGGTGCGGCAGAAACCATGCAAGACGCCGAGGAGAA
AGGAAAGGCTTGGACTGGTTCGGCGTATCAAAAGTTCACTGATGGATTTGGATTCAATCAAGAAAATGCAAGAGAGGGAGCTCAAAGTATAATGGATAGA
GCTGGAGATGCTGCCTCAAAGACCACAGATACTATGAATTCTGTTGCATCTGAAACTTCAAGGTATGCCTCTCAAAAGGCTGGTGAGGCAGCAGACATGG
CCTATGGGAAGGCGGGTGACATGAGGGACTTTGCTTCAGAGAAAGCCGATCAAGCCAAGCAAATGGCTTCCAATATTAAAGCTAGTGATGCCAGGGAAAC
ATTGGCAGGAGCAATGGAATATGGAGGGGGTAAAATTGAGGGTGCCTATGATGAAGCTAATCAGAAGTGGAACATTGTTAAAGACAAGGTTTCAGATGGA
GCAAACAATATGGAGGACACGATTGGTGGAGCTTTAGGATATGGAAAAGATAAAGCAGCAAATGCCTATGGTGATGCTAGCCAGAAAATGAACAGAGTCA
CAGATGAGGCTGATGATGCTAAAGAAAGAATGGGGGAATCAGTGGATTACGGAAAAAATAGAGCTGCTGATGCCTGTAACGAGGCTTCAAATATTGCATC
AGATTGGGCTAGTGATGCCAATGAGGCCGTTTCAGGAGCAATGAGATATGGAAGAGACCGAGCTGCGGATACTTATGATGAAGTTAAGAAGTATGCGAAA
GCGGACTCAAATATGGCTTCAAACAAGACAGGTGATGTGAAGGACACAATATCGGAAGCAATGTGGTACGGACACGAGAAAGTCACCGATGCCTATGATG
TAGCTAAAGAGGAGATCTACAGAACTTCAAATATAGCCTCAGAGAAGGCTAGCAAGGCCAAGGAAGCAGCGGCAGGAGCAATGGAGTATGGAGGAGATGG
TGAGAGAGATGCTTTTGATGAAACTAAGAACAAGATTGAGGAGGCATATGTGTCAGCCAAAGACACAATGACTGATCAGGCCAAGGCCAACTATGAAGCT
GCCAAGGAGACGCTGTCAAAGGCAACTGGTGATCTTGGAGATATATAA
AA sequence
>Potri.007G024000.1 pacid=42765733 polypeptide=Potri.007G024000.1.p locus=Potri.007G024000 ID=Potri.007G024000.1.v4.1 annot-version=v4.1
MEKRVAVIIMVMVLWMEVSLCWSTSYSTEDLVENTKERVNLAAEDARIKAEEMKHGAAETMQDAEEKGKAWTGSAYQKFTDGFGFNQENAREGAQSIMDR
AGDAASKTTDTMNSVASETSRYASQKAGEAADMAYGKAGDMRDFASEKADQAKQMASNIKASDARETLAGAMEYGGGKIEGAYDEANQKWNIVKDKVSDG
ANNMEDTIGGALGYGKDKAANAYGDASQKMNRVTDEADDAKERMGESVDYGKNRAADACNEASNIASDWASDANEAVSGAMRYGRDRAADTYDEVKKYAK
ADSNMASNKTGDVKDTISEAMWYGHEKVTDAYDVAKEEIYRTSNIASEKASKAKEAAAGAMEYGGDGERDAFDETKNKIEEAYVSAKDTMTDQAKANYEA
AKETLSKATGDLGDI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G36600 Late embryogenesis abundant (L... Potri.007G024000
[exp]
0 1
AT1G68800 TCP TCP12, BRC2, TC... BRANCHED 2, TCP domain protein... Potri.015G050500
[exp]
2.82 0.8152
AT4G36600 Late embryogenesis abundant (L... Potri.005G122400
[exp]
3.31 0.8083
AT4G20930 6-phosphogluconate dehydrogena... Potri.001G465600
[exp]
3.60 0.8478
AT3G14130 Aldolase-type TIM barrel famil... Potri.003G069300
[exp]
4.58 0.8155
AT1G27660 bHLH bHLH110 basic helix-loop-helix (bHLH) ... Potri.002G032400
[exp]
5.19 0.8383
AT5G57810 TET15 tetraspanin15 (.1) Potri.006G178000
[exp]
5.74 0.7498
AT4G22290 Ubiquitin-specific protease fa... Potri.002G176200
[exp]
6.32 0.8393
AT1G23090 SULTR3;3, AST91 sulfate transporter 91 (.1) Potri.008G130400
[exp]
10.67 0.8158 Pt-SULTR3.3
Potri.012G100900
[exp]
13.22 0.7580
AT3G26320 CYP71B36 "cytochrome P450, family 71, s... Potri.010G049200
[exp]
16.12 0.7939

Potri.007G024000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.