Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50880 292 / 1e-99 DNA glycosylase superfamily protein (.1) AT1G19480 279 / 5e-93 DNA glycosylase superfamily protein (.1.2) AT1G75230 271 / 2e-89 DNA glycosylase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G035300 [exp] 273 / 2e-90 AT1G19480 360 / 8e-123 DNA glycosylase superfamily protein (.1.2) Potri.005G227700 [exp] 273 / 3e-90 AT1G75230 385 / 3e-132 DNA glycosylase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041749 [exp] 313 / 3e-107 AT3G50880 308 / 3e-105 DNA glycosylase superfamily protein (.1) Lus10010824 [exp] 274 / 6e-91 AT1G19480 417 / 2e-145 DNA glycosylase superfamily protein (.1.2) Lus10033215 [exp] 272 / 2e-89 AT1G75230 416 / 3e-144 DNA glycosylase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0198 [poplar] [flax] HHH PF00730 [poplar] [flax] HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Representative CDS sequence Show only first row Show all	>Potri.007G024200.1 pacid=42766502 polypeptide=Potri.007G024200.1.p locus=Potri.007G024200 ID=Potri.007G024200.1.v4.1 annot-version=v4.1 ATGGGCAAACCCGTTACCCGATCCCACTCTCTACCTCTCCACGAACCCTCTTCTCCTCCACTATCCACTACCACCTCCTCCAAAATCTCATTTCAATCTA GAAAAATCAGAAAACTTTCAACCAACAAAACAACCACCACTACCACCGCTATAACCTCCACTTCCATCCCCCCTCTCAAACCCTTATCTCACAAAGGCGA AATAGAACTGGCACTTGATCATTTAAGCAAATCAGATCCTCTTCTTGCACCTCTATTAAACAGCCATGAACCACCAGCACTGAATCCTTGTACCTCACCG TTTCTTTCTTTAACAAAATCCATCCTTTTTCAACAACTAGCAACAAACGCAGCCAAATCAATCTACACACGTTTTCTCACTCTCTGTGACGGAGAATCTC AAGTAAACCCAGATACTGTACTCTCATTATCTGCCCCCAAACTCAGAGAAATCGGGGTTTCTGGTCGAAAAGCGAGTTATTTACATGACTTAGCAGAGAA ATATCGAAATGGGTCTTTATCTGACTCCTCAATTCTTGAAATGAATGATGATATGTTATTGAATAGGTTGACTGAAGTTAAGGGAATTGGGGTTTGGTCT GTGCATATGTTTATGCTATTTTCGTTGCACAGACCGGATGTTTTGCCTGTTGGTGATCTGGGTGTGAGAAAAGGGGTGCAAAGTTTGTATGGGTTGAAGG ATTTGCCACAGGCATTGGAGATGGAGCAGATTTGTGAGAAATGGAAGCCTTATAGGTCAGTTGGGTCGTGGTATATGTGGAGGTTAATGGAAGCTAAGGC TTTGGCGAATAAAGCAGCTAAAAAAGCATAA
AA sequence Show only first row Show all	>Potri.007G024200.1 pacid=42766502 polypeptide=Potri.007G024200.1.p locus=Potri.007G024200 ID=Potri.007G024200.1.v4.1 annot-version=v4.1 MGKPVTRSHSLPLHEPSSPPLSTTTSSKISFQSRKIRKLSTNKTTTTTTAITSTSIPPLKPLSHKGEIELALDHLSKSDPLLAPLLNSHEPPALNPCTSP FLSLTKSILFQQLATNAAKSIYTRFLTLCDGESQVNPDTVLSLSAPKLREIGVSGRKASYLHDLAEKYRNGSLSDSSILEMNDDMLLNRLTEVKGIGVWS VHMFMLFSLHRPDVLPVGDLGVRKGVQSLYGLKDLPQALEMEQICEKWKPYRSVGSWYMWRLMEAKALANKAAKKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50880			DNA glycosylase superfamily pr...		Potri.007G024200 [exp]	0	1
AT2G27610			Tetratricopeptide repeat (TPR)...		Potri.004G184800 [exp]	7.74	0.7770
AT2G33490			hydroxyproline-rich glycoprote...		Potri.001G061500 [exp]	13.85	0.7359
AT5G05130			DNA/RNA helicase protein (.1)		Potri.006G035700 [exp]	15.00	0.7295	CHR931
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Potri.001G102501 [exp]	20.37	0.7592
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.004G046100 [exp]	27.98	0.7764
AT5G06280			unknown protein		Potri.006G205200 [exp]	33.16	0.7225
AT5G13520			peptidase M1 family protein (....		Potri.008G045900 [exp]	35.94	0.7287
AT4G27190			NB-ARC domain-containing disea...		Potri.013G015900 [exp]	42.07	0.7400
AT5G57990		UBP23	ubiquitin-specific protease 23...		Potri.018G107500 [exp]	43.08	0.7294
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.010G154601 [exp]	45.50	0.7271

Compare expression of checked genes

Potri.007G024200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.