Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75220 702 / 0 AtERDL6 ERD6-like 6, Major facilitator superfamily protein (.1) AT1G19450 691 / 0 Major facilitator superfamily protein (.1) AT2G48020 387 / 6e-131 Major facilitator superfamily protein (.1.2) AT5G18840 387 / 1e-130 Major facilitator superfamily protein (.1) AT1G54730 371 / 2e-124 Major facilitator superfamily protein (.1.2.3) AT3G05150 359 / 1e-119 Major facilitator superfamily protein (.1) AT1G08930 352 / 2e-116 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT5G27360 336 / 1e-110 SFP2 Major facilitator superfamily protein (.1) AT5G27350 333 / 1e-109 SFP1 Major facilitator superfamily protein (.1) AT3G05400 331 / 9e-109 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G259900 [exp] 702 / 0 AT1G75220 744 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.002G212900 [exp] 402 / 2e-136 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 394 / 3e-133 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.013G027500 [exp] 384 / 2e-129 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.014G136600 [exp] 383 / 7e-129 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.005G039900 [exp] 355 / 4e-118 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G040000 [exp] 339 / 7e-112 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.005G037000 [exp] 337 / 8e-111 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027800 [exp] 323 / 8e-106 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028303 [exp] 681 / 0 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Lus10041748 [exp] 674 / 0 AT1G75220 697 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Lus10001656 [exp] 628 / 0 AT1G75220 707 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Lus10002534 [exp] 625 / 0 AT1G75220 711 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Lus10008183 [exp] 399 / 4e-135 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2) Lus10012780 [exp] 382 / 2e-128 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10029629 [exp] 381 / 3e-128 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008179 [exp] 373 / 9e-126 AT2G48020 590 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027975 [exp] 380 / 2e-124 AT2G48020 626 / 0.0 Major facilitator superfamily protein (.1.2) Lus10035354 [exp] 370 / 1e-123 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.007G024300.1 pacid=42764928 polypeptide=Potri.007G024300.1.p locus=Potri.007G024300 ID=Potri.007G024300.1.v4.1 annot-version=v4.1 ATGAGTCAGAGGGACGATGCTGAAGAGGCAAGAGATCAGCTTAGGAAACCTTTGCTCCAGACAGGGAGTTGGTATAGAATGAGCTCAAGGCAATCCAGTA TAATGAGTTCCTCCGCTCAGATGCTCCGTGATGGTTCTGTTTCTGTTGTTCTTTGTGTCCTCATTGTCGCTTTAGGCCCCATCCAATTCGGTTTCACTTG TGGTTATTCTTCGCCTACACAAGCAGAAATCATTAGCGATCTTAAGCTTTCTATTTCAGAGTTTTCGATGTTTGGTTCATTATCAAATGTGGGTGCTATG ATTGGTGCTTTAGTAAGTGGCCAACTTGCAGAATATATTGGTCGAAAAGGGTCTTTGGTGGTCGCGGCGGTGCCTAATATAATTGGATGGCTAAGCATAT CTTTTGCTGTTGATTCATCATTTTTGTTCATGGGAAGGTTGTTGGAAGGGTTTGGTGTCGGTATAATCTCATACACGGTACCTGTATATATAGCTGAAAT AGCGCCTCAGGACATGAGAGGAAGTCTTGGATCGGTTAACCAGCTCTCAGTGACAATTGGAATATTGCTGTCTTATCTACTGGGACTTTTTGTTAATTGG AGAGTGCTTGCTGTTTTAGGATGTTTTCCTTGTGCCCTATTAATTCTTGGCTTATTTTTCATACCCGAATCTCCTCGATGGCTGGCCAAAATGGGGATGA CGGAAGATTTTGAAGCCTCTTTGCAAGTTTTACGAGGATATGACACTGACATTACTGCTGAAGTGAATGAAATCAAGAGAGCTGTTGCATCTTCAAGCAA AAGAACAACAATTCGTTTTGCAGATCTCAAGCGAAGAAGATATTGGTTTCCTTTGATGGTAGGAATTGGATTGCTTGTGCTCCAGCAATTCAGTGGTATC AATGGGATCTTTTTCTATTCCAGTAACATCTTTGCAAATGCTGGAATTTCCTCAAGCAATCTTGCTACATGTGGACTTGGAGCTATCCAGGTCATAGCCA CTGGGATCTCTTCGTGGTTGATGGATAAAGCTGGGCGCAGATTGCTTCTTATTATATCTACAACTGGAGTTACTCTTAGCTTGCTTCTGGTTGCTATTGC TTTTTATTTGCAGGGCATTTTACCACAAGATTCTGATTTGTATCACATAATGGGAATTGTGTCACTTGGAGGACTTGTGGCTGTGGTAATTTTCTTCTCA GTGGGACTAGGAGCTATTCCTTGGATCATAATGTCTGAGATTCTCCCTGTGAACATCAAGGGCATCGCTGGCTCGGTTGCAACATTGGCAAATTGGCTTG CTTCCTGGCTTGTTACAATGACTGCAAACTTGCTCATGAGTTGGAGCAGTGCAGGGACCTTTACTATTTACACGGTGGTCAGTGCTTTCACTGTCATTTT TGTGTCTCTCTGGGTCCCTGAAACCAAAGGAAGAACTCTAGAAGAAATACAATTGTCGTTCAGATGA
AA sequence Show only first row Show all	>Potri.007G024300.1 pacid=42764928 polypeptide=Potri.007G024300.1.p locus=Potri.007G024300 ID=Potri.007G024300.1.v4.1 annot-version=v4.1 MSQRDDAEEARDQLRKPLLQTGSWYRMSSRQSSIMSSSAQMLRDGSVSVVLCVLIVALGPIQFGFTCGYSSPTQAEIISDLKLSISEFSMFGSLSNVGAM IGALVSGQLAEYIGRKGSLVVAAVPNIIGWLSISFAVDSSFLFMGRLLEGFGVGIISYTVPVYIAEIAPQDMRGSLGSVNQLSVTIGILLSYLLGLFVNW RVLAVLGCFPCALLILGLFFIPESPRWLAKMGMTEDFEASLQVLRGYDTDITAEVNEIKRAVASSSKRTTIRFADLKRRRYWFPLMVGIGLLVLQQFSGI NGIFFYSSNIFANAGISSSNLATCGLGAIQVIATGISSWLMDKAGRRLLLIISTTGVTLSLLLVAIAFYLQGILPQDSDLYHIMGIVSLGGLVAVVIFFS VGLGAIPWIIMSEILPVNIKGIAGSVATLANWLASWLVTMTANLLMSWSSAGTFTIYTVVSAFTVIFVSLWVPETKGRTLEEIQLSFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Potri.007G024300 [exp]	0	1
AT3G10640		VPS60.1	SNF7 family protein (.1.2)		Potri.010G242700 [exp]	3.00	0.7010
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.016G138700 [exp]	8.36	0.6898
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.005G045100 [exp]	11.66	0.6745	NHX2.1
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Potri.010G241800 [exp]	13.03	0.6464
AT3G48260		WNK3	with no lysine (K) kinase 3 (....		Potri.012G086700 [exp]	17.66	0.6177	WNK3.2
AT1G76550			Phosphofructokinase family pro...		Potri.002G003100 [exp]	18.97	0.6184
AT4G29810		MK1, ATMKK2	MAP KINASE KINASE 1, MAP kinas...		Potri.018G050800 [exp]	24.91	0.5820	Pt-MEK1.2
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Potri.014G060900 [exp]	25.29	0.5627	Pt-VAP27.5
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Potri.001G471500 [exp]	26.70	0.5935
AT4G34280			transducin family protein / WD...		Potri.009G092500 [exp]	27.14	0.6287

Compare expression of checked genes

Potri.007G024300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.