Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18360 452 / 2e-161 alpha/beta-Hydrolases superfamily protein (.1) AT4G36610 436 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) AT5G21950 177 / 1e-53 alpha/beta-Hydrolases superfamily protein (.1) AT1G78210 171 / 5e-51 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 166 / 5e-49 alpha/beta-Hydrolases superfamily protein (.1) AT4G39955 154 / 4e-44 alpha/beta-Hydrolases superfamily protein (.1) AT5G09430 147 / 6e-42 alpha/beta-Hydrolases superfamily protein (.1) AT1G17430 137 / 5e-38 alpha/beta-Hydrolases superfamily protein (.1) AT1G72620 137 / 5e-38 alpha/beta-Hydrolases superfamily protein (.1) AT5G38520 57 / 7e-09 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G122600 [exp] 596 / 0 AT2G18360 444 / 5e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155800 [exp] 365 / 3e-127 AT2G18360 340 / 3e-117 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116900 [exp] 353 / 1e-122 AT2G18360 324 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155700 [exp] 347 / 7e-120 AT2G18360 317 / 4e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116800 [exp] 345 / 7e-119 AT2G18360 316 / 2e-107 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G117000 [exp] 330 / 5e-113 AT2G18360 311 / 7e-106 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G117100 [exp] 319 / 6e-109 AT2G18360 304 / 4e-103 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G219400 [exp] 172 / 1e-51 AT4G33180 329 / 3e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G313100 [exp] 155 / 6e-45 AT5G09430 466 / 7e-167 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041747 [exp] 474 / 1e-169 AT2G18360 436 / 1e-154 alpha/beta-Hydrolases superfamily protein (.1) Lus10025873 [exp] 246 / 3e-80 AT2G18360 243 / 2e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10028302 [exp] 191 / 1e-59 AT2G18360 172 / 1e-52 alpha/beta-Hydrolases superfamily protein (.1) Lus10038076 [exp] 168 / 5e-50 AT4G33180 333 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Lus10020926 [exp] 156 / 4e-45 AT1G78210 358 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10023147 [exp] 150 / 8e-43 AT4G39955 414 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10019631 [exp] 141 / 3e-39 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) Lus10000630 [exp] 138 / 2e-38 AT4G39955 386 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) Lus10012409 [exp] 136 / 2e-37 AT1G17430 259 / 1e-84 alpha/beta-Hydrolases superfamily protein (.1) Lus10022106 [exp] 132 / 6e-36 AT1G72620 264 / 4e-87 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00561 [poplar] [flax] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.007G024400.1 pacid=42766658 polypeptide=Potri.007G024400.1.p locus=Potri.007G024400 ID=Potri.007G024400.1.v4.1 annot-version=v4.1 ATGGTGAACCTAGTGGCAGCACAGAAGCCATTATTGCATGGCCTGATGAAAATGGCAGGAGTGCAACCCCACATAGTAGAGATTGAGCCAGGGACAGTCA TGAACTTTTGGGTGCCAAATGAGACCGTCAAGAAACCTCAAAAGGGTGAAAAGAAAAACGACACCCCAACCTTAACCAAACCAAACAAACCAGTAGTGGT TCTAGTCCATGGCTTTGCTGCTGAAGGTATTGTCACTTGGCAATTCCAAGTTGGTGCCTTAACCAAGAAGTATTCAGTTTATATCCCTGACCTTCTATTC TTCGGTGGCTCAATCACTGATAAAACAGACCGGTCGCCAACGTTTCAAGCAGAAACATTGGTGAAGGGTCTGAGGAAGATAGGAGTAGAGAAGTGTATAT TAGTGGGGTTTAGCTACGGTGGCATGGTGGCGTTTAAGATGGCTGAGTTGTATCCTGACCTGGTTCAGGCCATGGTCATATCCGGCTCAATCCTGGCAAT GACTGACTCAATTAGTGAAGCAACACTAAGTGAGCTTGGGTTCAAGTCTTCCTCGGAACTTTTGCTGCCTAATTCTGTTAACGGTCTTAAAGCACTACTT TCTGTTGCTACTCACAAGAAGCTTTGGTTCCCAAATCGGCTTCACAAAGACTACCTCGAGGTGATGTTCACCAATCGAAAGGAGAGAGCTGAACTTCTAG AGGGATTAGTCATCAACAATAAAGATCCAACCATCCCAAAATTTGTACAGAAAATACATCTCTTATGGGGGGAGAATGATCAAATCTTCAAGCTGGAGCA TGCACAGAACATGAAAGAGAAATTAGGCGAGACGGTAACATTTCAGGGCATACAGAAGGCAGGTCACTTAGTTCAACTGGAACGACCTTGTGTCTATAAT AAATGTCTCAAGCAATTTCTTACTTCACTGCTTGAAAATGACGAGCAGAAGTGA
AA sequence Show only first row Show all	>Potri.007G024400.1 pacid=42766658 polypeptide=Potri.007G024400.1.p locus=Potri.007G024400 ID=Potri.007G024400.1.v4.1 annot-version=v4.1 MVNLVAAQKPLLHGLMKMAGVQPHIVEIEPGTVMNFWVPNETVKKPQKGEKKNDTPTLTKPNKPVVVLVHGFAAEGIVTWQFQVGALTKKYSVYIPDLLF FGGSITDKTDRSPTFQAETLVKGLRKIGVEKCILVGFSYGGMVAFKMAELYPDLVQAMVISGSILAMTDSISEATLSELGFKSSSELLLPNSVNGLKALL SVATHKKLWFPNRLHKDYLEVMFTNRKERAELLEGLVINNKDPTIPKFVQKIHLLWGENDQIFKLEHAQNMKEKLGETVTFQGIQKAGHLVQLERPCVYN KCLKQFLTSLLENDEQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.007G024400 [exp]	0	1
AT1G75170			Sec14p-like phosphatidylinosit...		Potri.007G025900 [exp]	1.00	0.9865
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270400 [exp]	1.41	0.9798
AT1G24430			HXXXD-type acyl-transferase fa...		Potri.010G053800 [exp]	3.46	0.9679
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Potri.014G113100 [exp]	3.87	0.9705
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Potri.002G057200 [exp]	4.69	0.9605
AT2G48090			unknown protein		Potri.014G137850 [exp]	4.89	0.9642
AT1G03700			Uncharacterised protein family...		Potri.019G100300 [exp]	5.00	0.9659
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Potri.004G185100 [exp]	5.47	0.9652
AT2G44290			Bifunctional inhibitor/lipid-t...		Potri.006G195700 [exp]	6.00	0.9632
AT3G55560	AT-hook	AHL15, AGF2	AT-hook motif nuclear-localize...		Potri.010G200100 [exp]	6.78	0.9231

Compare expression of checked genes

Potri.007G024400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.