Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MNP.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50870 201 / 6e-64 GATA GATA18, HAN, MNP MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1) AT4G36620 144 / 2e-42 GATA GATA19, HANL2 hanaba taranu like 2, GATA transcription factor 19 (.1) AT2G18380 114 / 3e-31 GATA GATA20, HANL1 hanaba taranu like 1, GATA transcription factor 20 (.1) AT5G56860 65 / 6e-12 GATA GATA21, GNC GATA, nitrate-inducible, carbon metabolism-involved, GATA TRANSCRIPTION FACTOR 21, GATA type zinc finger transcription factor family protein (.1) AT5G49300 62 / 7e-12 GATA GATA16 GATA transcription factor 16 (.1) AT4G26150 64 / 8e-12 GATA GATA22, CGA1, GNL GNC-LIKE, GATA TRANSCRIPTION FACTOR 22, cytokinin-responsive gata factor 1 (.1) AT5G26930 61 / 9e-12 GATA GATA23 GATA transcription factor 23 (.1) AT3G06740 61 / 2e-11 GATA GATA15 GATA transcription factor 15 (.1) AT3G20750 61 / 3e-11 GATA GATA29 GATA transcription factor 29 (.1) AT1G08010 62 / 6e-11 GATA GATA11 GATA transcription factor 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G122700 [exp] 419 / 6e-150 AT3G50870 198 / 1e-62 MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1) Potri.006G229200 [exp] 67 / 1e-12 AT4G26150 111 / 3e-28 GNC-LIKE, GATA TRANSCRIPTION FACTOR 22, cytokinin-responsive gata factor 1 (.1) Potri.008G213900 [exp] 63 / 3e-12 AT3G06740 126 / 4e-38 GATA transcription factor 15 (.1) Potri.005G020500 [exp] 62 / 6e-12 AT3G06740 67 / 1e-14 GATA transcription factor 15 (.1) Potri.010G001300 [exp] 62 / 7e-12 AT3G06740 135 / 2e-41 GATA transcription factor 15 (.1) Potri.018G053600 [exp] 63 / 2e-11 AT4G26150 75 / 4e-15 GNC-LIKE, GATA TRANSCRIPTION FACTOR 22, cytokinin-responsive gata factor 1 (.1) Potri.014G124400 [exp] 60 / 3e-11 AT5G49300 106 / 2e-30 GATA transcription factor 16 (.1) Potri.002G199800 [exp] 59 / 8e-11 AT5G49300 112 / 1e-32 GATA transcription factor 16 (.1) Potri.002G142800 [exp] 59 / 5e-10 AT3G60530 189 / 1e-59 GATA transcription factor 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028301 [exp] 141 / 1e-41 AT3G50870 135 / 4e-39 MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1) Lus10041746 [exp] 127 / 3e-35 AT3G50870 93 / 8e-22 MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1) Lus10037721 [exp] 63 / 4e-12 AT3G06740 153 / 2e-48 GATA transcription factor 15 (.1) Lus10016849 [exp] 62 / 5e-12 AT3G06740 154 / 6e-49 GATA transcription factor 15 (.1) Lus10031464 [exp] 61 / 4e-11 AT3G24050 69 / 3e-15 GATA transcription factor 1 (.1) Lus10029863 [exp] 60 / 1e-10 AT4G16141 90 / 1e-22 GATA type zinc finger transcription factor family protein (.1) Lus10020684 [exp] 59 / 2e-10 AT4G16141 94 / 9e-24 GATA type zinc finger transcription factor family protein (.1) Lus10010027 [exp] 57 / 4e-10 AT5G49300 87 / 8e-23 GATA transcription factor 16 (.1) Lus10009227 [exp] 59 / 6e-10 AT3G54810 162 / 8e-47 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Lus10037994 [exp] 59 / 7e-10 AT3G54810 160 / 6e-46 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00320 [poplar] [flax] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Potri.007G024500.1 pacid=42765085 polypeptide=Potri.007G024500.1.p locus=Potri.007G024500 ID=Potri.007G024500.1.v4.1 annot-version=v4.1 ATGATGCATAGGTGCAGTAGTTCTCACTGTAATATGGTAGGTCCATGTTCATGTAGTATGTATCATACCCAGAGCAACTCATTCTCCATGCTATTTTCCA TGCCAAACCATCACAAATCTTTTGATGAAACAGACATGTACCCTGTCACGTCCCCTTCGTCTTCTGTTGATTGCACTCTTTCGTTAGGAACCCCATCTAC TCGTTTAAGTGAAGACGATGAGAAAAGGATGCGGCATGATCAACGCCGTTCTGGTTCTTGCATGTCTAACTTTTGTTGGGATATTTTGCAAACAAAAAAT AATTCTACACCTTATCCACCTCAAGCCCATAAAACTAGCCGTGGAAGTAGTAATAGCAGTCATAATAGCAATAACAACCTGGCCAATAACGATCCTCTCC TTGCTCGCCGATGTGCTAATTGTGACACCACCTCTACTCCTCTCTGGAGAAACGGTCCAAGAGGCCCTAAGTCGCTTTGCAATGCGTGTGGAATTCGGTT CAAAAAGGAAGAGAGAAGGGCAACAGCCGCAAGCGCAAACAATGCAAGTGCCTCAGGTGCAATGGAGCAGCACTATGGTTATCATCAAAACAATTCATGG GTTCAGACCCAAAAAATGCCATGTTTCTCTCCGGCAAATGAATTCAGGTTCATAGAAGACAATGATCGAGATTCTGATACTGGCAATAACATCCCGTTCC TTTCTTGGAGACTCAATGTCACAGACAGGCCTAGCCAGCTTGTTCATGACTTTACAAGATACTGA
AA sequence Show only first row Show all	>Potri.007G024500.1 pacid=42765085 polypeptide=Potri.007G024500.1.p locus=Potri.007G024500 ID=Potri.007G024500.1.v4.1 annot-version=v4.1 MMHRCSSSHCNMVGPCSCSMYHTQSNSFSMLFSMPNHHKSFDETDMYPVTSPSSSVDCTLSLGTPSTRLSEDDEKRMRHDQRRSGSCMSNFCWDILQTKN NSTPYPPQAHKTSRGSSNSSHNSNNNLANNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRATAASANNASASGAMEQHYGYHQNNSW VQTQKMPCFSPANEFRFIEDNDRDSDTGNNIPFLSWRLNVTDRPSQLVHDFTRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Potri.007G024500 [exp]	0	1	Pt-MNP.1
AT4G22010		SKS4	SKU5 similar 4 (.1)		Potri.014G154500 [exp]	3.46	0.9162
AT4G05220			Late embryogenesis abundant (L...		Potri.011G027400 [exp]	4.12	0.9286
AT5G45540			Protein of unknown function (D...		Potri.015G107800 [exp]	6.70	0.9080
AT3G50120			Plant protein of unknown funct...		Potri.003G159300 [exp]	6.92	0.9262
AT4G39700			Heavy metal transport/detoxifi...		Potri.007G087300 [exp]	7.21	0.9101
AT1G09750			Eukaryotic aspartyl protease f...		Potri.002G104600 [exp]	8.94	0.8811
AT5G45480			Protein of unknown function (D...		Potri.015G113700 [exp]	9.38	0.8896
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Potri.003G093000 [exp]	10.48	0.8907
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Potri.006G084200 [exp]	11.48	0.9070	Pt-DOF2.3
AT4G15140			unknown protein		Potri.011G108700 [exp]	12.96	0.8760

Compare expression of checked genes

Potri.007G024500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.