Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63810 1399 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026014 [exp] 1518 / 0 AT1G63810 1313 / 0.0 unknown protein Lus10014305 [exp] 1487 / 0 AT1G63810 1318 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [poplar] [flax] NTP_transf PF03813 [poplar] [flax] Nrap Nrap protein domain 1
Representative CDS sequence Show only first row Show all	>Potri.007G024600.1 pacid=42766805 polypeptide=Potri.007G024600.1.p locus=Potri.007G024600 ID=Potri.007G024600.1.v4.1 annot-version=v4.1 ATGGATTCCGATACTCTAACAGAACCGATGGACTTTAAAGTATCAGAATTAATAAACGAAGTTCAAATCGAACATTCTCCCTCTTTCACCAAGCTCGTAA ACGACACCGTTTCATCTATCCAAAATTCCATCGACAAAATCCCTAACAACCTCGTGGTTACAGGCGAGGAAGCGGCGGGGTTCGTTAGAGACGTCGGAGC GGATAAAGTGGAGTTTAAGTTTAAGAAGCCGAAATCGATTGCAATTGGTGGCAGTTATTCGATAAAGTGTGTCGTGAAGCCGGATGTTAGTGTTGACCTT TTCATTCAATTGCCTAAGGAGTGTTTTCATGAGAAAGATTATTTAAATCATCGCTATCATGCGAAGAGGTTTGTTTATTTATGTGTGATTAACAAGTTCT TGAAGTCGGATTCATCGTTTGAAAAGGTTGAATGGTCTACGCTTCAAAACGAGGCCCGGAAACCTGTGCTGCTTGTCTATCCAGCTGACAAGCTTGCCGA AATTCCTGGGTTCTTTGTGAGGATAATTCCTACAGCGAAATCTTTGTTTAATACTGCAAAGTTGGACTTGAAACGGAACAATGTCCGTGTTTTGAATCAA GGTGGGACTGCTTTGCCTACACCAAGATATAACAGTAGTATTTTGGAAGACATGTGTTTAGAGGACAATACAGAATTTCTCAAGAAAACTTTTCTTGGAC AGAAGGCATTGGGAGAGGCTTTAGTTTTGCTGAAGGTTTGGGCTCGACAGAGAGATTCTATACATTCTCACGATAGCCTAAATGGATATTTAATAGCTAT CATATTGTCATATCTTGTGGCTTATGAGAAGGTTAATAGTTCCATGAGGCCACTGCAAATATTTCGAGTCACCTTGGACTTCATAGCCAATTCAAAATTA TGGACTCGGGGGCTTTTCTTACAAAAGCAAGGTGAGGTCAAGATATTGAAGGAGGATAGGATGCTGTATAAAGAATCATTTCCAGTTGTCATATTCGATT CAACCACTCACATCAATTTAACTTTTCGGATAAAAGATAGTGGTTTCTCAGAGCTCCAAGACGAGGCTGCTCAGACACTTCAATGCTTTGGGAAATCTGG AGATAGTGCATTTGAGGATATCTTCATGACCAAGATTGACTTTCCTGCCAGATATGATTATTGTGTAAGATTGAGCTTAAAAGGAAATAGTGAGTTCTAT TCTTCTGGATATTGCTTGGACGAAGAATGTTGGAGATTGTATGAGAAAAAGGTGCAGAGTCTTCTATCTCAAGGACTGAGTGATCGAGCCAAGTCAATTC GTGTTATTTGGAGAAATATCCCTTCAGGTTGCAGTCTGGAAAATGGTTTGTCAACACTTGATGGAGAACCATTGCTAGCTGGAATTTCTCTAAGCTCTTT AGATAAAGCATTTCGAGTTGTTGATATTGGTCCGGATGCTGAAAATAAAGAAGAGGCTGCCAGGTTTCGGAAGTTTTGGGGGGAGAAAGCAGAGCTCAGG AGATTTAAGGATGGCAAAATTGCTGAAAGCACAGTATGGGAAAGTGAGCAGTGGAAGAAACATCTCATTTTAAAAAGAATAGTAGAATATATACTTCTTC GTCATCTTTCTATATCAAAAACCAGTATTGAGCAAACTGTGGATCAACTTGACTTTTCTCTTCTTCATGGTGTTGAAGATCCTATGTCATTTTCTGCAAG TTTGCTTGGGGCATTTGATATCCTATCAAAGCGCTTGCGTCTTATAGAAGACATTCCCTTGAAGGTGTCCAGCGTGCAGCCTTTAGACCCAGCTTTCAGG TTCACATCTGTCTTCCCTCCTGAACCACACCCAATAGCAAGTGAAAAGGGTAATGTTCCAAGACCACATAAGCTCACTTCATCCTGCATCCAGCCATTGG AAGTTATGATTCAGTTGGAAGGTTCTGGGAACTGGCCAATGGATGATGTGGCAATTGAGAAAACCAAATCTGCTTTTCTTCTCAAAATTGGAGAGAGTCT CGAGAATAGTTGGGGGATGACATGTACTGCGACTGAAGATGACGTGGATGTTTTTCTGTCTGGATATGCATTTCGTCTAAAAATTTTGCACGAGAGAGGC TTGAGCTTGGTGAAAAGAGAAACTGGAAGTGACCAGGGAAAACAGGTCTCTTCTGCAGACCAGAAACTCTTTGTTCGCAGTCAGCATTCTAGCATGATTA ATGGGTTGCAAGGTGTTTTCCCAATATATGGGCCAGTTGTTAGGCTTGCTAAAAGATGGGTTGCGTCACATATGTTCTCGGCATGCTTGTCAGAGGAGGC AATTGAGTTATTGGTTGCGCATCTCTTTGTGAAGCCTTTGCCTTTCACTGCTCCTTGTTCACGCATCACTGGATTTCTAAGGTTCTTGCGATTGCTAGCA GAGTATGATTGGACCTTTTCTCCTCTTATTGTTGACATAAATAGTGATTTCAACCCAAGTGATAAGAAAGAGATTTATGACAAGTTTATGCTGACTAGAA AAGGTTATGAAGAAAGTAGCCAAAACATAAGTCCAGCAATGTTCTTGGCGACATCCTATGACAAGGCATCTGAAGCTTGGACCAGACTCTCACCAAACGT ACTGGAACTTAAAAGGTTGGTGGCTTATGCTCGTAGCAGTGCAAACCTGCTTACCAGACTCGTATTTCAGGATCAGACAGAATCTTACAGATGGGAGTGC CTTTTCTGCACTCCTCTTACCAACTATGATGCTGTAATCCTTCTCCATGGGGACAGATTACCATATCCTCAACGTCTTCTCTTCCCTTCAAAATTAAACC ATGGGAGGCTTGTGGCTCGTGGGAATGCTAGCAAAGCTTTCCAGCCCTTTATGTTACCTGGAGATTTACGAGGGAGCTTAGACAAGTTGAAAAATAAGCT ATTGGTGGACTTTGATCCACTTAGGTGCTACATTGCAGATCTGGAGAAAGAATGCAACACATTGAAGATGTGGTATGATTCTCTGGGAGGCGACGCCATT GGACTAACATGGGAGAGATCTTGTTCAAAGAAGCGGGATCGAGAAGAAGCCAGCAGCGATGAAGACCCAATTGATGTCTTAAAGGCTGTGGGTGAAGCTG GTAAACGGTTTGTAAAGAGTGTACATTTTCTCAAGGCTCCAAGGCTCATGAATTAA
AA sequence Show only first row Show all	>Potri.007G024600.1 pacid=42766805 polypeptide=Potri.007G024600.1.p locus=Potri.007G024600 ID=Potri.007G024600.1.v4.1 annot-version=v4.1 MDSDTLTEPMDFKVSELINEVQIEHSPSFTKLVNDTVSSIQNSIDKIPNNLVVTGEEAAGFVRDVGADKVEFKFKKPKSIAIGGSYSIKCVVKPDVSVDL FIQLPKECFHEKDYLNHRYHAKRFVYLCVINKFLKSDSSFEKVEWSTLQNEARKPVLLVYPADKLAEIPGFFVRIIPTAKSLFNTAKLDLKRNNVRVLNQ GGTALPTPRYNSSILEDMCLEDNTEFLKKTFLGQKALGEALVLLKVWARQRDSIHSHDSLNGYLIAIILSYLVAYEKVNSSMRPLQIFRVTLDFIANSKL WTRGLFLQKQGEVKILKEDRMLYKESFPVVIFDSTTHINLTFRIKDSGFSELQDEAAQTLQCFGKSGDSAFEDIFMTKIDFPARYDYCVRLSLKGNSEFY SSGYCLDEECWRLYEKKVQSLLSQGLSDRAKSIRVIWRNIPSGCSLENGLSTLDGEPLLAGISLSSLDKAFRVVDIGPDAENKEEAARFRKFWGEKAELR RFKDGKIAESTVWESEQWKKHLILKRIVEYILLRHLSISKTSIEQTVDQLDFSLLHGVEDPMSFSASLLGAFDILSKRLRLIEDIPLKVSSVQPLDPAFR FTSVFPPEPHPIASEKGNVPRPHKLTSSCIQPLEVMIQLEGSGNWPMDDVAIEKTKSAFLLKIGESLENSWGMTCTATEDDVDVFLSGYAFRLKILHERG LSLVKRETGSDQGKQVSSADQKLFVRSQHSSMINGLQGVFPIYGPVVRLAKRWVASHMFSACLSEEAIELLVAHLFVKPLPFTAPCSRITGFLRFLRLLA EYDWTFSPLIVDINSDFNPSDKKEIYDKFMLTRKGYEESSQNISPAMFLATSYDKASEAWTRLSPNVLELKRLVAYARSSANLLTRLVFQDQTESYRWEC LFCTPLTNYDAVILLHGDRLPYPQRLLFPSKLNHGRLVARGNASKAFQPFMLPGDLRGSLDKLKNKLLVDFDPLRCYIADLEKECNTLKMWYDSLGGDAI GLTWERSCSKKRDREEASSDEDPIDVLKAVGEAGKRFVKSVHFLKAPRLMN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63810			unknown protein		Potri.007G024600 [exp]	0	1
AT3G09720			P-loop containing nucleoside t...		Potri.019G065300 [exp]	1.41	0.8749
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Potri.009G047500 [exp]	1.73	0.8603
AT1G10490			Domain of unknown function (DU...		Potri.007G079300 [exp]	2.23	0.8782
AT1G30240			unknown protein		Potri.010G238000 [exp]	4.00	0.8472
AT2G34357			ARM repeat superfamily protein...		Potri.006G137900 [exp]	5.47	0.8302
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Potri.019G052100 [exp]	5.91	0.7380	Pt-XPO1.1
AT2G03667			Asparagine synthase family pro...		Potri.010G157700 [exp]	7.34	0.7728
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Potri.005G211600 [exp]	9.38	0.7920
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Potri.002G203700 [exp]	11.83	0.7924
AT3G16810		APUM24	pumilio 24 (.1)		Potri.010G005600 [exp]	11.83	0.8296

Compare expression of checked genes

Potri.007G024600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.