Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47530 200 / 6e-60 Auxin-responsive family protein (.1) AT5G35735 186 / 2e-54 Auxin-responsive family protein (.1) AT3G25290 182 / 4e-53 Auxin-responsive family protein (.1.2) AT2G04850 178 / 1e-51 Auxin-responsive family protein (.1) AT4G12980 176 / 7e-51 Auxin-responsive family protein (.1) AT4G17280 172 / 2e-49 Auxin-responsive family protein (.1) AT3G59070 157 / 3e-43 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G07570 119 / 5e-30 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G61750 88 / 9e-19 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT5G48750 84 / 5e-18 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G249300 [exp] 201 / 3e-60 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2) Potri.014G162000 [exp] 197 / 4e-59 AT5G47530 369 / 2e-126 Auxin-responsive family protein (.1) Potri.006G015000 [exp] 196 / 1e-58 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.010G156600 [exp] 195 / 4e-58 AT5G47530 497 / 2e-176 Auxin-responsive family protein (.1) Potri.016G010900 [exp] 194 / 9e-58 AT5G47530 498 / 8e-177 Auxin-responsive family protein (.1) Potri.004G006700 [exp] 182 / 9e-55 AT5G35735 156 / 2e-45 Auxin-responsive family protein (.1) Potri.002G222700 [exp] 183 / 1e-53 AT5G35735 369 / 8e-126 Auxin-responsive family protein (.1) Potri.014G161700 [exp] 181 / 9e-53 AT2G04850 577 / 0.0 Auxin-responsive family protein (.1) Potri.010G156200 [exp] 180 / 1e-52 AT5G47530 472 / 1e-166 Auxin-responsive family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000915 [exp] 357 / 4e-120 AT3G25290 205 / 2e-61 Auxin-responsive family protein (.1.2) Lus10012350 [exp] 207 / 2e-62 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10021553 [exp] 199 / 8e-62 AT3G25290 165 / 5e-49 Auxin-responsive family protein (.1.2) Lus10001734 [exp] 204 / 2e-61 AT5G47530 422 / 9e-147 Auxin-responsive family protein (.1) Lus10002274 [exp] 200 / 6e-60 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1) Lus10001162 [exp] 190 / 6e-56 AT2G04850 563 / 0.0 Auxin-responsive family protein (.1) Lus10001736 [exp] 187 / 6e-55 AT2G04850 559 / 0.0 Auxin-responsive family protein (.1) Lus10025877 [exp] 181 / 2e-53 AT3G25290 387 / 2e-134 Auxin-responsive family protein (.1.2) Lus10017564 [exp] 175 / 2e-50 AT5G47530 419 / 8e-146 Auxin-responsive family protein (.1) Lus10010498 [exp] 164 / 3e-46 AT5G47530 412 / 1e-142 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04526 [poplar] [flax] DUF568 Protein of unknown function (DUF568)
Representative CDS sequence Show only first row Show all	>Potri.007G024700.1 pacid=42765881 polypeptide=Potri.007G024700.1.p locus=Potri.007G024700 ID=Potri.007G024700.1.v4.1 annot-version=v4.1 ATGGCATCCACTGCTGTTACTACGTTCATAGTTTTCATAGCAGTCTTATTCTTGCTTGTGAACAGCAGTGCTGCTCATTACATCCCTTGTAGTGAATCTC TCATTAAGATAGCCCAGGAAAAAAACATTTCACACTGCAAGAAATTGACCACTCTAGGAGCTGAGTTTGGATGGGAAGTCAGTAAACACAACGAGAGCCA AGTTGACATTCTCATTGGCACAAGGCTAAATAATGCAGAAATGGTGTGGCTAGCCTGGGGTGTGAACCCAGAGGACAAGCCACAGATGGTTGGAACAAGA GCAATAATAGGCATCAGGCAACTGAATGGCTCAGTCGGTGCCAACACCTATAATATCACAGGTGATACCAAGCTAGGTTGCAAGCTACAGCCTTCAGAAA TTGATGTAAATGTTACGAGAATGAAATTAGATTATGCGACATCATTAGACTACCTCACGCTACATGCAACAATTGTACTTCCTTCAATGTACAATATTTC AAGACTGAATCATGTGTGGCAAGTTGGATATGATGCCCAAGGAGCAGAACCCTCGATGCATCCCACAGCTCTCCAGAATGTTGACAGTACAGAAACAATA GACTTGAGGAATGGATTGGCTCAACATGTGGGAGAGTTAGAGGGTCGTCTCAGAAAGATTCATGGCGTCTTGAACATTATAGGGTGGGGAACCTTCTTGC CTGCAGGTGTGATAATCGCAAGATATTTCCCTTATCCATTGACACTCGGAAGTTATAGGTATCATCTTCATGTTGGCTGCCAAATTATAGGGTACATTCT TGGTGTAACTGGGTGGAGCGTTGGCCTATGGCTAGGACAAGCTTCTAAACACTACTCCTTTAAAATCCACAGGCTTTTTGCCACATTTATATTCACCTTC ACAACATTACAAATGTTGGCATTGCACTTGAAACCGCGTAAAACGGACGAGTATAGGAAGTACTGGAACATGTACCATCATTTTCTGGGCTATGCTCTGC TTGCTGTGATCTCAGTAAACATTTTTCATGGCATTGACATTTTGAGGCCAGACCACTCCTGGAAATGGGCTTACGTTGGAATCCTTGGGGTGTTTGCTGT CATTGCTATAGCTCTTGAGATCTACACTTGGGCCAAGTTTCTTACCGAGGACAAAAAATCCAAAACCGTAAAGCCGGGATCTGGATCTGGATCTGGATCT GGAGGGACTGCCGCTACTGAAACTCAAACCACCACCTCTTGA
AA sequence Show only first row Show all	>Potri.007G024700.1 pacid=42765881 polypeptide=Potri.007G024700.1.p locus=Potri.007G024700 ID=Potri.007G024700.1.v4.1 annot-version=v4.1 MASTAVTTFIVFIAVLFLLVNSSAAHYIPCSESLIKIAQEKNISHCKKLTTLGAEFGWEVSKHNESQVDILIGTRLNNAEMVWLAWGVNPEDKPQMVGTR AIIGIRQLNGSVGANTYNITGDTKLGCKLQPSEIDVNVTRMKLDYATSLDYLTLHATIVLPSMYNISRLNHVWQVGYDAQGAEPSMHPTALQNVDSTETI DLRNGLAQHVGELEGRLRKIHGVLNIIGWGTFLPAGVIIARYFPYPLTLGSYRYHLHVGCQIIGYILGVTGWSVGLWLGQASKHYSFKIHRLFATFIFTF TTLQMLALHLKPRKTDEYRKYWNMYHHFLGYALLAVISVNIFHGIDILRPDHSWKWAYVGILGVFAVIAIALEIYTWAKFLTEDKKSKTVKPGSGSGSGS GGTAATETQTTTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47530			Auxin-responsive family protei...		Potri.007G024700 [exp]	0	1
AT1G12064			unknown protein		Potri.006G009500 [exp]	4.00	0.9046
AT3G18260			Reticulon family protein (.1)		Potri.015G044300 [exp]	4.00	0.9290
AT2G20560			DNAJ heat shock family protein...		Potri.007G135800 [exp]	5.83	0.9045
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Potri.011G135400 [exp]	8.71	0.9294
AT3G18670			Ankyrin repeat family protein ...		Potri.004G003600 [exp]	13.07	0.9011
AT5G22870			Late embryogenesis abundant (L...		Potri.009G003800 [exp]	14.17	0.9281
AT5G20870			O-Glycosyl hydrolases family 1...		Potri.006G216700 [exp]	14.28	0.9270
AT4G05220			Late embryogenesis abundant (L...		Potri.011G027400 [exp]	16.49	0.9168
AT3G61172		LCR8	low-molecular-weight cysteine-...		Potri.016G061600 [exp]	17.74	0.9198
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Potri.012G081300 [exp]	19.23	0.9123

Compare expression of checked genes

Potri.007G024700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.