Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TTN5.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18390 326 / 1e-115 HAL, ARL2, TTN5, ATARLC1 TITAN 5, HALLIMASCH, ARF-LIKE 2, ADP-ribosylation factor family protein (.1) AT5G14670 157 / 7e-49 ATARFA1B ADP-ribosylation factor A1B (.1) AT1G10630 156 / 7e-49 ATARFA1F ADP-ribosylation factor A1F (.1) AT2G47170 156 / 8e-49 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT3G62290 155 / 3e-48 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT1G23490 155 / 4e-48 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT1G70490 155 / 4e-48 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT2G15310 154 / 9e-48 ATARFB1A ADP-ribosylation factor B1A (.1) AT2G24765 152 / 5e-47 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT5G17060 147 / 8e-45 ATARFB1B ADP-ribosylation factor B1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G005500 [exp] 157 / 3e-49 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1) Potri.008G100000 [exp] 157 / 5e-49 AT1G10630 366 / 1e-131 ADP-ribosylation factor A1F (.1) Potri.013G005600 [exp] 156 / 8e-49 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.005G007300 [exp] 156 / 8e-49 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.010G152600 [exp] 155 / 2e-48 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1) Potri.018G013700 [exp] 155 / 2e-48 AT2G24765 336 / 6e-120 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.001G301200 [exp] 155 / 3e-48 AT3G62290 284 / 4e-99 ADP-ribosylation factor A1E (.1.2.3) Potri.005G142100 [exp] 155 / 3e-48 AT1G10630 339 / 5e-121 ADP-ribosylation factor A1F (.1) Potri.014G116500 [exp] 155 / 3e-48 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026383 [exp] 323 / 3e-114 AT2G18390 317 / 3e-112 TITAN 5, HALLIMASCH, ARF-LIKE 2, ADP-ribosylation factor family protein (.1) Lus10021092 [exp] 317 / 1e-105 AT3G58460 535 / 0.0 RHOMBOID-like protein 15 (.1.2) Lus10030884 [exp] 156 / 2e-48 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10031436 [exp] 155 / 2e-48 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10002817 [exp] 154 / 6e-48 AT2G15310 273 / 1e-94 ADP-ribosylation factor B1A (.1) Lus10013021 [exp] 157 / 1e-47 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 155 / 1e-47 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10029144 [exp] 156 / 1e-45 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1) Lus10009571 [exp] 148 / 2e-45 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1) Lus10020392 [exp] 147 / 9e-45 AT5G17060 363 / 3e-130 ADP-ribosylation factor B1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00071 [poplar] [flax] Ras Ras family
Representative CDS sequence Show only first row Show all	>Potri.007G024800.1 pacid=42765426 polypeptide=Potri.007G024800.1.p locus=Potri.007G024800 ID=Potri.007G024800.1.v4.1 annot-version=v4.1 ATGGGGCTGCTTAGCATCATTAGAAAAATCAAGAGAAAAGAGAAAGAAATGCGCATCCTCATGGTGGGACTTGATAATTCAGGGAAGACAACAATAGTTT TGAAGATAAATGGAGAAGACACCAGTGTTATTAGTCCTACTCTTGGATTCAATATCAAAACCATCTCTTATCAAAAGTACACTTTAAATATATGGGATGT GGGGGGACAAAGAACCATAAGATCATACTGGAGGAACTACTTTGAGCAAACTGATGGCTTGGTCTGGGTGGTGGATAGTTCAGATCTTAGAAGGTTGGAT GATTGCAAAATGGAGCTCGATAATCTTTTGAAGGAAGAGAGGCTATCAGGAGCATCTCTACTAATATTTGCAAATAAGCAAGACATAAAAGGTGCTCTTA CACCGGAGGAAATTGCTAAAGTATTGAACCTAGAGAATATGGATAAAACCCGACACTGGAAAATTGTGGGCTGCAGTGCGTACACAGGTGAAGGGCTGCT TGAAGGATTTGATTGGTTGGTTCAGGACATTGCCTCGCGAATCTATATGCTTGACTAA
AA sequence Show only first row Show all	>Potri.007G024800.1 pacid=42765426 polypeptide=Potri.007G024800.1.p locus=Potri.007G024800 ID=Potri.007G024800.1.v4.1 annot-version=v4.1 MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTISYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLD DCKMELDNLLKEERLSGASLLIFANKQDIKGALTPEEIAKVLNLENMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIYMLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Potri.007G024800 [exp]	0	1	Pt-TTN5.1
AT2G27730			copper ion binding (.1)		Potri.004G201700 [exp]	2.44	0.7966
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Potri.008G090700 [exp]	5.29	0.7191
AT1G51980			Insulinase (Peptidase family M...		Potri.008G193200 [exp]	8.12	0.7439
AT5G58710		ROC7	rotamase CYP 7 (.1)		Potri.001G251700 [exp]	10.19	0.6552	CYP5.2
AT1G16810			unknown protein		Potri.010G253400 [exp]	10.24	0.7435
AT5G25450			Cytochrome bd ubiquinol oxidas...		Potri.006G250000 [exp]	16.24	0.7163
AT3G05940			Protein of unknown function (D...		Potri.005G000600 [exp]	19.49	0.7025
AT2G44525			Protein of unknown function (D...		Potri.014G179500 [exp]	20.78	0.7203
AT2G27730			copper ion binding (.1)		Potri.009G163100 [exp]	21.07	0.5944
AT1G69980			unknown protein		Potri.008G191700 [exp]	28.93	0.7027

Compare expression of checked genes

Potri.007G024800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.