Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49555 943 / 0 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT1G06820 81 / 6e-16 CCR2, CRTISO CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) AT1G57770 57 / 3e-08 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066000 [exp] 81 / 5e-16 AT1G06820 903 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Potri.006G199600 [exp] 75 / 5e-14 AT1G06820 877 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Potri.003G005800 [exp] 61 / 1e-09 AT1G57770 869 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041743 [exp] 974 / 0 AT5G49555 933 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10014308 [exp] 831 / 0 AT5G49555 850 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10024010 [exp] 660 / 0 AT5G49555 607 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10026016 [exp] 477 / 1e-164 AT5G49555 494 / 2e-171 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10029347 [exp] 92 / 2e-19 AT1G06820 913 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Lus10016199 [exp] 87 / 7e-18 AT1G06820 912 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Lus10037348 [exp] 50 / 4e-06 AT1G57770 900 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13450 [poplar] [flax] NAD_binding_8 NAD(P)-binding Rossmann-like domain
Representative CDS sequence Show only first row Show all	>Potri.007G025300.1 pacid=42766647 polypeptide=Potri.007G025300.1.p locus=Potri.007G025300 ID=Potri.007G025300.1.v4.1 annot-version=v4.1 ATGTGGAGACGGAGCTTTAGCACGGCAACCAATGCCTCGACCGCACTGAAGGAGAAGAAATGGGACGCGCTGGTGATCGGCGCCGGCCACAACGGCCTAA CAGCTGCCGCTTATTTAGCTGGCTCCGGCCTATCCGTCGCCGTTCTTGAACGCCGCCACGTCATCGGCGGAGCTGCCGTAACGGAAGAACTGATTCCAGG CTTCAAGTTCTCTCGCTGTAGTTATCTCCAAAGTCTCCTCCGTCCTTCACTCATCAAAGAGTTGGAGTTAGGGAGGCATGGATTGAAGTTGTTGAAGAGG AGTCCGTCGTCTTTTACGCCGTGTTTAGATGGAAGCTACCTTTTATTAGGGCCTGATAGAGAGCTTAATCATTCAGAGATCTCTAAGTTCTCTGTTAATG ACGCCAATGCATATCACAGATATGAGAAGCAGCTAGAGAGTTTCTGTAAGTTGATGGATCCTTTGTTGGACTCGCCACCACCAGAAACTGCGCAAAATGG AGCGTCTTTTAATGATCGATTGAAGGACAAATTGAGAAAATCGGCTTTTTGGGCAAGTTTTATGCGGCAAGCGCTCTCATTAGGGCAAAAAGATTTGGTG GATTTTATGGACCTTTTGTTGTCTCCAGCTTCGAAGGTTTTGAATAAATGGTTTGAGACAGATGTTCTTAAGGCAACTCTTGCAACAGATGCTGTGATAG GTTCTACGGCAAGTGTCCATACACCAGGGAGTGGATATGTTTTGCTACATCACGTGATGGGAGAAACTGATGGGGAACGTGGAATTTGGTCGTATGTTGA AGGTGGGATGGGTTCAGTATCCTCTGCTATCGCAAATGCTGCTAGGGAATCTGGGGCTCATATTGTGACAAGTGCAGAGGTTTCACAATTGATGATCAAG GATTCTGGCACTGTGAATGGGGTATTACTGGCTGATGGTACAGAAGTTCTCTCTCCAATTGTTCTGTCAAATGCCACTCCTTATAAGACTTTCTTGGAAT TAGTCCCTAATAATACCCTTCCTGATGATTTTACCCGTGCCCTGAAGTACTCTGACTATAGCTCTGCAACTACAAAGATTAATCTAGCTGTTGATAAACT CCCCCAATTTCAATGCTGCAAGTTGAATCATCCTGATGCTGGTCCTCAGCACGTGGGCACTATTCATATTGGTTCAGAGAGTATGGAGGAGATTGATTTG GCTTGTCAAGATGCTGTCAATGGGGTACCATCAAGAAGGCCAGTTATCGAAATGACAATTCCTTCTGTATTGGACAAAACTATTTCTCCTCCTGGTAAGC ATGTGATCAACTTGTTTGTCCAATACACACCCTATAAGCCATCAGATGGAAGCTGGGGAGATTCTGCTTATAGAGAATCATTTGCACAAAAATGTTTTAG CTTGATTGAGGAATATGCCCCTGGGTTCAGCTCATCAATCATTGGCTATGACATGTTGACTCCACCAGATCTTGAAAGGGAAATTGGTCTTACAGGAGGG AATATATTCCACGGTGCTATGGGATTGGATTCCCTTTTCCTCATGCGACCAGTGAAAGGATGGTCGAGCTATAGGACTCCTCTCCAAGGGCTGTATTTGT GTGGAAGCGGAACCCATCCAGGGGGTGGTGTGATGGGCGCACCTGGACGCAATGCTGCACATGTCGTTCTTCAAGATGTTGAAAAACGTTGA
AA sequence Show only first row Show all	>Potri.007G025300.1 pacid=42766647 polypeptide=Potri.007G025300.1.p locus=Potri.007G025300 ID=Potri.007G025300.1.v4.1 annot-version=v4.1 MWRRSFSTATNASTALKEKKWDALVIGAGHNGLTAAAYLAGSGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKELELGRHGLKLLKR SPSSFTPCLDGSYLLLGPDRELNHSEISKFSVNDANAYHRYEKQLESFCKLMDPLLDSPPPETAQNGASFNDRLKDKLRKSAFWASFMRQALSLGQKDLV DFMDLLLSPASKVLNKWFETDVLKATLATDAVIGSTASVHTPGSGYVLLHHVMGETDGERGIWSYVEGGMGSVSSAIANAARESGAHIVTSAEVSQLMIK DSGTVNGVLLADGTEVLSPIVLSNATPYKTFLELVPNNTLPDDFTRALKYSDYSSATTKINLAVDKLPQFQCCKLNHPDAGPQHVGTIHIGSESMEEIDL ACQDAVNGVPSRRPVIEMTIPSVLDKTISPPGKHVINLFVQYTPYKPSDGSWGDSAYRESFAQKCFSLIEEYAPGFSSSIIGYDMLTPPDLEREIGLTGG NIFHGAMGLDSLFLMRPVKGWSSYRTPLQGLYLCGSGTHPGGGVMGAPGRNAAHVVLQDVEKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Potri.007G025300 [exp]	0	1
AT5G19420			Regulator of chromosome conden...		Potri.001G026900 [exp]	2.44	0.7765
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Potri.008G155000 [exp]	3.16	0.7601	PAFE902
AT2G22720			SPT2 chromatin protein (.1.2.3...		Potri.005G148700 [exp]	6.92	0.7671
AT5G15170		TDP1	tyrosyl-DNA phosphodiesterase ...		Potri.004G022500 [exp]	13.74	0.6985
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Potri.004G211300 [exp]	24.00	0.7029	Pt-HB1.7
AT5G07740			actin binding (.1)		Potri.012G067900 [exp]	25.29	0.7148
AT3G22430			unknown protein		Potri.009G147201 [exp]	26.53	0.6509
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Potri.003G074200 [exp]	27.34	0.7316
AT5G08110			nucleic acid binding;ATP-depen...		Potri.012G063201 [exp]	27.92	0.7332
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.019G021500 [exp]	37.94	0.7092

Compare expression of checked genes

Potri.007G025300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.