Plant FIBer expression Database

Potri.007G025500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G45540 125 / 1e-29 Protein of unknown function (DUF594) (.1)
AT5G45480 120 / 5e-28 Protein of unknown function (DUF594) (.1)
AT4G19080 115 / 5e-28 Protein of unknown function (DUF594) (.1)
AT5G45530 108 / 2e-24 Protein of unknown function (DUF594) (.1)
AT5G45470 106 / 1e-23 Protein of unknown function (DUF594) (.1)
AT5G45460 104 / 3e-23 unknown protein
AT4G19090 94 / 8e-20 Protein of unknown function (DUF594) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G059200
[exp]
703 / 0 AT5G45540 200 / 3e-54 Protein of unknown function (DUF594) (.1)
Potri.015G107900
[exp]
661 / 0 AT5G45540 186 / 3e-49 Protein of unknown function (DUF594) (.1)
Potri.015G116201
[exp]
645 / 0 AT5G45540 203 / 2e-55 Protein of unknown function (DUF594) (.1)
Potri.015G113400
[exp]
630 / 0 AT5G45470 182 / 5e-48 Protein of unknown function (DUF594) (.1)
Potri.015G116100
[exp]
623 / 0 AT5G45540 192 / 3e-51 Protein of unknown function (DUF594) (.1)
Potri.015G107800
[exp]
620 / 0 AT5G45540 213 / 8e-59 Protein of unknown function (DUF594) (.1)
Potri.015G113700
[exp]
613 / 0 AT5G45480 181 / 2e-47 Protein of unknown function (DUF594) (.1)
Potri.015G114101
[exp]
608 / 0 AT5G45540 177 / 3e-46 Protein of unknown function (DUF594) (.1)
Potri.015G113600
[exp]
608 / 0 AT5G45540 190 / 2e-50 Protein of unknown function (DUF594) (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04578 DUF594 Protein of unknown function, DUF594
PF13968 DUF4220 Domain of unknown function (DUF4220)
Representative CDS sequence
>Potri.007G025500.2 pacid=42766610 polypeptide=Potri.007G025500.2.p locus=Potri.007G025500 ID=Potri.007G025500.2.v4.1 annot-version=v4.1
ATGACAATGCTCAAGAAATTGCCTGAAGAAGTCTTAAATTTGTGGAACACATGGGAGATTCGAGGAATGCTTTTAGTTAGTCTCTTACTACAAATCATCC
TCATTATATTTGGTTCCCGAAGAAAGTACATTGCAAGAAGCTGGGTCAGGATTTTTGTTTGGAGCCAAGGCGATTCAGCAGGTGGCGGTTCAAATAAAGC
AAACAATTTAATCCAGGCATTTTGGGCTCCTTTTCTACTCCTGCACCTTGGTGGCCCAGACACAATCACTGCATACTCGATTGAAGATAACGAGTTGTGG
TTTAGGCACTTACTTGGTCTTGCAGTCCAAGTCGGAGTGGCTTTGCAGGTCTTCTCAAGGTCTTGGGGTAGCGGTATCCTCACATTCATAGCGATCCCAA
TGCTCATTGTTGGCATTATAAAGTACGCAGAGATGACCTGGGTGCTCAGGTCTTCATGCTCCAAGAGCTTGAAAAACACCTTTCTCTCAAAATTTCGACC
ATTTTACCCATTAAGGGCAACAGAAACTCTTCAACGAGCTCTCGGGGGAAATTATCTTCGTCGAGTTTATACCTTCTTCGATATATCCATGTTTATGATG
CAGGATCTTGTCCCTGGCATTCCTGCACTAATGAACAGCCAGTTGCTGATTTCCTCAAATTCAGCAGACGATGCCTTCAAGGTGGTAGAAGTTGAGCTTG
GATTAATATATGATATGCTTTATACTAAAGCGCCCCTGATTTACTCCCTTGTCGGAATCATTCTTCGCTCTATCAGCTTTCTACTCTTTTTTACTGCGTT
TATTACCTTCCAAGTCATGATTGACAAGCATGCCTACCCAACAATCGACATTACAATTACATCCATAGCGCAGCATAACCTGATAAGCTTTTGCATTGAA
AACAAGCCACTTAAATATTGTTTGGAATTGCTCGGAATCCTTGAAATGACGAGGCAGGTGTATGTGGATCGGGAAGATATGAATGTTGGACTACGAAATT
CTATTTTCGGACACCTTCAAAAGAAATGCGAGAAGATCAAGGAGAATTTTAATTTCATTGATACAAATTTCAGAAGGAAAATAATTGGTCAGAGAGGAGA
CGGTGTGCTAGAAGGAGAGGGACAATTACATGACTTCAAGTGGTGTACAACTGAAGTAGAATTCAGCCGGAGCCTTCTTGTCTGGCACCTCGCAACAGAT
ATTTGCTATTTTGCTGATAAAGATGCAAATAATAATGTCCCTTCAGACTGCGAAACAAGCAAATGCTTGTCTGAATACACGATGTATCTTCTGGTGGCGA
GACCAAATATGCTCCCTAAAGGAATCGGTGATATAGAGAAGGGATATCTAGATACTTGCCAGGACCTGGCGCTTTTAGGAAAAGTCATTGCAACAGGCGA
GCAGGCGCTGAGTAAGAAGGATGTTGTCGATACAATACTGCTCGGCATTGAATCATACACTACTGCTGAGAGTGATTTTCTGAGCGACTGGAGAACAACC
AAGTCGGTGCTAGATGGTGGGTATTGGCTCGCCAGGCAATTGCGGTCATGGGGACTCGAGAAGCGATGGAAGATGATAAATGAAGTTTGGATAGAAATGC
TTGCTTATGCTGCAGCTCATTGTCCAAGAAAAGAACATGCTCAGCAACTGAGGAGAGGTGGAGAGCTACTCACTCATGTCAGCTTTCTTATGCTACATTT
TGGTTTCAGCGAACAATATGAATACTTCCGATTTGAAGACGTCCAAGTTCTTAGTTGTTGGAATTTGACGGTGGTAAGTATTCCTAAAATTAATAAACCA
GATTATTTTTATTTATACATTTTTTCTCAGTTCACTATTTTGAAAATTCCATTTGAATGTCCTCATTTCGTTTTTTCCATTTTATTAATAAAATAA
AA sequence
>Potri.007G025500.2 pacid=42766610 polypeptide=Potri.007G025500.2.p locus=Potri.007G025500 ID=Potri.007G025500.2.v4.1 annot-version=v4.1
MTMLKKLPEEVLNLWNTWEIRGMLLVSLLLQIILIIFGSRRKYIARSWVRIFVWSQGDSAGGGSNKANNLIQAFWAPFLLLHLGGPDTITAYSIEDNELW
FRHLLGLAVQVGVALQVFSRSWGSGILTFIAIPMLIVGIIKYAEMTWVLRSSCSKSLKNTFLSKFRPFYPLRATETLQRALGGNYLRRVYTFFDISMFMM
QDLVPGIPALMNSQLLISSNSADDAFKVVEVELGLIYDMLYTKAPLIYSLVGIILRSISFLLFFTAFITFQVMIDKHAYPTIDITITSIAQHNLISFCIE
NKPLKYCLELLGILEMTRQVYVDREDMNVGLRNSIFGHLQKKCEKIKENFNFIDTNFRRKIIGQRGDGVLEGEGQLHDFKWCTTEVEFSRSLLVWHLATD
ICYFADKDANNNVPSDCETSKCLSEYTMYLLVARPNMLPKGIGDIEKGYLDTCQDLALLGKVIATGEQALSKKDVVDTILLGIESYTTAESDFLSDWRTT
KSVLDGGYWLARQLRSWGLEKRWKMINEVWIEMLAYAAAHCPRKEHAQQLRRGGELLTHVSFLMLHFGFSEQYEYFRFEDVQVLSCWNLTVVSIPKINKP
DYFYLYIFSQFTILKIPFECPHFVFSILLIK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G45540 Protein of unknown function (D... Potri.007G025500
[exp]
0 1
AT1G50520 CYP705A27 "cytochrome P450, family 705, ... Potri.009G065100
[exp]
4.58 0.9539
AT1G62770 Plant invertase/pectin methyle... Potri.001G119200
[exp]
14.73 0.9353
AT1G53440 Leucine-rich repeat transmembr... Potri.010G155150
[exp]
17.66 0.9475
AT3G11310 unknown protein Potri.002G200700
[exp]
25.88 0.9124
Potri.006G271692
[exp]
30.33 0.9393
AT1G53440 Leucine-rich repeat transmembr... Potri.016G011601
[exp]
34.81 0.9377
Potri.004G184650
[exp]
41.56 0.9341
AT5G05800 unknown protein Potri.008G176600
[exp]
46.28 0.9134
AT2G36380 ABCG34, PDR6, A... ATP-binding cassette G34, plei... Potri.009G147100
[exp]
48.49 0.9289
AT5G16990 Zinc-binding dehydrogenase fam... Potri.017G002600
[exp]
48.78 0.9220

Potri.007G025500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.