Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75170 409 / 9e-145 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G36640 396 / 7e-140 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G22180 271 / 3e-90 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G08690 249 / 6e-82 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G01630 93 / 3e-22 Sec14p-like phosphatidylinositol transfer family protein (.1) AT3G22410 82 / 2e-17 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G05370 78 / 3e-16 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G19650 76 / 4e-15 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT5G63060 72 / 2e-14 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G14820 70 / 7e-14 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G123200 [exp] 572 / 0 AT1G75170 414 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025900 [exp] 471 / 3e-169 AT1G75170 369 / 3e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G261000 [exp] 418 / 2e-148 AT1G75170 427 / 3e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.013G068700 [exp] 281 / 9e-94 AT1G22180 351 / 6e-121 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G093400 [exp] 278 / 6e-92 AT4G08690 375 / 5e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G168100 [exp] 107 / 9e-28 AT4G08690 134 / 4e-38 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.017G063966 [exp] 103 / 1e-25 AT1G01630 340 / 2e-118 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.003G162100 [exp] 96 / 4e-23 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G068000 [exp] 92 / 1e-21 AT1G01630 361 / 3e-127 Sec14p-like phosphatidylinositol transfer family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014312 [exp] 457 / 5e-164 AT1G75170 397 / 4e-140 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10026020 [exp] 459 / 2e-163 AT1G75170 397 / 4e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10010804 [exp] 414 / 6e-147 AT1G75170 393 / 7e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10016312 [exp] 407 / 2e-144 AT1G75170 387 / 2e-136 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10025128 [exp] 374 / 3e-131 AT1G75170 380 / 3e-134 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10020911 [exp] 263 / 2e-86 AT4G08690 376 / 1e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10033464 [exp] 261 / 3e-86 AT4G08690 378 / 4e-132 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023956 [exp] 164 / 6e-50 AT4G36640 166 / 1e-50 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10016733 [exp] 111 / 7e-29 AT1G01630 325 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10004684 [exp] 107 / 3e-27 AT1G01630 326 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain CL0214 [poplar] [flax] UBA PF03765 [poplar] [flax] CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.007G025800.4 pacid=42765298 polypeptide=Potri.007G025800.4.p locus=Potri.007G025800 ID=Potri.007G025800.4.v4.1 annot-version=v4.1 ATGTTTCGAAGAAAGCACTCTCAGAATCATCAGGAGAATGGCCTTGCAGAACAAGAAGCAAAGCAGGTCAGTGAACTCAGGGCTGCTCTAGGACCTCTTT CTGATCGAAGTGTAAAGTACTGCACTGATGCATGCCTGAGGAGATATTTAATAGCGCGGAACTGGAATGTCGACAAGGCAAAGAAAATGTTGGAAGAGAC ACTCAAGTGGAGAGCAACTTATAAGCCTGAAGAAATCCGCTGGCATGAAGTAGCTCATGAAGGCGAGACTGGTAAAGTCTCCAGAGCAGATTTTCATGAT CGATCTGGGAGGACTGTGCTCATAATGAGACCAGGAATGCAGAACACAACATGTGCAGAAGACAATGTCCGCCATTTGGTTTATCTTATAGAGAACGGTA TTCTTAACCTTGGTGAGGGTCAAGAACAAATGTCATGGTTGATAGACTTCACTGGATGGGGTTTGAGCGTCAAGGTCCCCATCAAAACTGCCCGTGAATG CATTAACATCTTACAGAACCATTACCCTGAGAGACTTGCTGTTGCATTTCTTTATAATCCGCCTAGAATATTTGAAGCATTTTGGAAGGTTGTCAAGTTC TTCCTGGATCCAATTACTATCCAGAAGGTGAAGTTTGTTTACCCAAAAAAAGAAAATAGTTTCGAGCTCATGAAGTCTTTCTTTGATGTTGACAACCTCC CAAACGAGTTCGGGGGAAAAGCCACACTGACGTACGACCATGAAGAGTTTTCACGACTAATGGCCCAGGATGATGTAAAAACAGCCAAGTTCTGGGGATT AGATGAAAAACCAAGCCACATTGCTAACAGTCACTCAGGGGCACAGGTGGCGCCAGAGCCAACACCTCTTGCACTGCCGGCTAGCTAA
AA sequence Show only first row Show all	>Potri.007G025800.4 pacid=42765298 polypeptide=Potri.007G025800.4.p locus=Potri.007G025800 ID=Potri.007G025800.4.v4.1 annot-version=v4.1 MFRRKHSQNHQENGLAEQEAKQVSELRAALGPLSDRSVKYCTDACLRRYLIARNWNVDKAKKMLEETLKWRATYKPEEIRWHEVAHEGETGKVSRADFHD RSGRTVLIMRPGMQNTTCAEDNVRHLVYLIENGILNLGEGQEQMSWLIDFTGWGLSVKVPIKTARECINILQNHYPERLAVAFLYNPPRIFEAFWKVVKF FLDPITIQKVKFVYPKKENSFELMKSFFDVDNLPNEFGGKATLTYDHEEFSRLMAQDDVKTAKFWGLDEKPSHIANSHSGAQVAPEPTPLALPAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75170			Sec14p-like phosphatidylinosit...		Potri.007G025800 [exp]	0	1
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Potri.001G132900 [exp]	4.35	0.8594
					Potri.015G137350 [exp]	4.47	0.8473
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Potri.002G080700 [exp]	29.83	0.8451
AT3G58710	WRKY	ATWRKY69, WRKY6...	RABIDOPSIS THALIANA WRKY DNA-B...		Potri.014G119800 [exp]	32.58	0.7865
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.016G138700 [exp]	33.16	0.7537
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Potri.018G112400 [exp]	43.63	0.8311	Pt-AHA6.3
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Potri.019G077200 [exp]	51.43	0.8180	AGL11.1
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G120800 [exp]	70.35	0.8152	FLA14.5
AT3G43210		TES, ATNACK2	TETRASPORE, ARABIDOPSIS NPK1-A...		Potri.006G136600 [exp]	70.51	0.8066	Pt-TES.1
AT1G47480			alpha/beta-Hydrolases superfam...		Potri.004G143200 [exp]	72.99	0.8198

Compare expression of checked genes

Potri.007G025800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.